Variant report

Variant	rs73575842
Chromosome Location	chr16:80077893-80077894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16952080	0.82[AFR][1000 genomes]
rs4889069	0.82[AFR][1000 genomes]
rs58944962	1.00[AMR][1000 genomes]
rs73571906	1.00[AMR][1000 genomes]
rs73573909	1.00[AMR][1000 genomes]
rs73573920	0.82[AFR][1000 genomes]
rs73573922	0.82[AFR][1000 genomes]
rs73573930	1.00[AMR][1000 genomes]
rs73573932	1.00[AMR][1000 genomes]
rs73573935	1.00[AMR][1000 genomes]
rs73573938	1.00[AMR][1000 genomes]
rs73574002	1.00[AMR][1000 genomes]
rs73575815	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575816	1.00[AMR][1000 genomes]
rs73575832	1.00[AMR][1000 genomes]
rs73575834	1.00[AMR][1000 genomes]
rs73575837	1.00[AMR][1000 genomes]
rs73575840	1.00[AMR][1000 genomes]
rs73575850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73583878	1.00[AMR][1000 genomes]
rs73585968	1.00[AMR][1000 genomes]
rs73585997	1.00[AMR][1000 genomes]
rs73589924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80073200-80078000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:80075000-80079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:80076000-80078200	Enhancers	Fetal Stomach	stomach
5	chr16:80076000-80079600	Weak transcription	Fetal Intestine Large	intestine
6	chr16:80076400-80081200	Enhancers	Ovary	ovary
7	chr16:80076800-80078200	Enhancers	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links