Variant report

Variant	rs73573909
Chromosome Location	chr16:80058604-80058605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:80052898..80058811-chr16:80059069..80065197,11	MCF-7	breast:
2	chr16:79802080..79804842-chr16:80056465..80059230,3	MCF-7	breast:
3	chr16:80058380..80061170-chr16:80073042..80075693,3	MCF-7	breast:
4	chr16:80045568..80049024-chr16:80056361..80060062,5	MCF-7	breast:
5	chr16:80051534..80054466-chr16:80056610..80058867,2	MCF-7	breast:
6	chr16:80032529..80034163-chr16:80057052..80059822,2	MCF-7	breast:
7	chr16:80056858..80058802-chr16:80070010..80071819,2	MCF-7	breast:
8	chr16:79640662..79643059-chr16:80057931..80060430,2	MCF-7	breast:
9	chr16:80058579..80060805-chr16:80116598..80118912,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260876	Chromatin interaction
ENSG00000260237	Chromatin interaction
ENSG00000261390	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12051173	1.00[AFR][1000 genomes]
rs58944962	1.00[AMR][1000 genomes]
rs73571906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573935	1.00[AMR][1000 genomes]
rs73573938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73574002	1.00[AMR][1000 genomes]
rs73575815	1.00[AMR][1000 genomes]
rs73575816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575832	1.00[AMR][1000 genomes]
rs73575834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575840	1.00[AMR][1000 genomes]
rs73575842	1.00[AMR][1000 genomes]
rs73575850	1.00[AMR][1000 genomes]
rs73583878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585968	1.00[AMR][1000 genomes]
rs73585997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80057000-80059000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:80057200-80059000	Enhancers	HSMMtube	muscle
3	chr16:80057200-80059600	Enhancers	Fetal Stomach	stomach
4	chr16:80057400-80059600	Enhancers	Stomach Smooth Muscle	stomach
5	chr16:80057800-80058800	Flanking Active TSS	A549	lung
6	chr16:80057800-80059400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:80058000-80059400	Weak transcription	Colon Smooth Muscle	Colon
8	chr16:80058000-80060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:80058000-80060600	Weak transcription	HSMM	muscle
10	chr16:80058000-80061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:80058000-80061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:80058000-80061000	Weak transcription	Placenta	Placenta
13	chr16:80058000-80061000	Weak transcription	Small Intestine	intestine
14	chr16:80058000-80061200	Weak transcription	Right Atrium	heart
15	chr16:80058000-80062200	Weak transcription	Esophagus	oesophagus
16	chr16:80058200-80059200	Weak transcription	NHEK	skin
17	chr16:80058200-80060400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:80058200-80060400	Weak transcription	HMEC	breast
19	chr16:80058200-80060600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr16:80058200-80060800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr16:80058200-80060800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr16:80058200-80060800	Weak transcription	K562	blood
23	chr16:80058200-80060800	Weak transcription	NH-A	brain
24	chr16:80058400-80060800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr16:80058400-80060800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr16:80058400-80061000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr16:80058400-80061000	Weak transcription	Osteobl	bone
28	chr16:80058600-80059200	Enhancers	Duodenum Mucosa	Duodenum
29	chr16:80058600-80059200	Enhancers	Fetal Muscle Leg	muscle
30	chr16:80058600-80060600	Weak transcription	HUVEC	blood vessel

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