Variant report

Variant	rs73578337
Chromosome Location	chr6:142653673-142653674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:142648503..142651872-chr6:142652500..142656138,3	MCF-7	breast:
2	chr6:142644240..142648928-chr6:142651290..142656139,5	MCF-7	breast:
3	chr6:142653598..142655313-chr6:142655827..142657929,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56674756	0.85[AFR][1000 genomes]
rs58758475	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60150871	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60185388	0.85[AFR][1000 genomes]
rs60199449	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60625761	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580457	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580470	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580474	0.85[AFR][1000 genomes]
rs73582544	0.85[AFR][1000 genomes]
rs73582555	0.85[AFR][1000 genomes]
rs73582556	0.85[AFR][1000 genomes]
rs73582558	0.85[AFR][1000 genomes]
rs73582562	0.85[AFR][1000 genomes]
rs73582566	0.85[AFR][1000 genomes]
rs73582567	0.85[AFR][1000 genomes]
rs73582568	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142643000-142653800	Weak transcription	Fetal Heart	heart
2	chr6:142649000-142655400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:142649800-142653800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:142650600-142654200	Enhancers	HMEC	breast
5	chr6:142650800-142654200	Enhancers	Fetal Lung	lung
6	chr6:142650800-142654600	Enhancers	NHLF	lung
7	chr6:142651000-142654600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:142651000-142656600	Enhancers	Liver	Liver
9	chr6:142651200-142654400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:142651400-142654800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:142651800-142654000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:142652200-142653800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:142652400-142654200	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:142652600-142653800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:142652600-142653800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:142652600-142656600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:142652800-142653800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:142652800-142654000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:142653000-142653800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:142653000-142654200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:142653000-142656000	Enhancers	HUVEC	blood vessel
22	chr6:142653000-142660800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:142653200-142657200	Enhancers	HepG2	liver
24	chr6:142653400-142653800	Weak transcription	A549	lung
25	chr6:142653600-142654000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:142653600-142654000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:142653600-142654400	Enhancers	NHEK	skin

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