Variant report

Variant	rs73594729
Chromosome Location	chr16:73030536-73030537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72868863..72870630-chr16:73029004..73031833,2	MCF-7	breast:
2	chr16:73001913..73003547-chr16:73029774..73031958,2	MCF-7	breast:
3	chr16:72978479..72979087-chr16:73030273..73030809,2	MCF-7	breast:
4	chr16:73028886..73036567-chr16:73043066..73055500,18	MCF-7	breast:
5	chr16:72866647..72870227-chr16:73029377..73032600,4	MCF-7	breast:
6	chr16:73028923..73036951-chr16:73080210..73093920,29	MCF-7	breast:
7	chr16:72989385..72992195-chr16:73028743..73030750,2	MCF-7	breast:
8	chr16:72881859..72883612-chr16:73029183..73031070,2	MCF-7	breast:
9	chr16:72982797..72988288-chr16:73028963..73032993,7	MCF-7	breast:
10	chr16:73029969..73032717-chr16:73066881..73070752,3	MCF-7	breast:
11	chr16:72961867..72965826-chr16:73027664..73032310,5	MCF-7	breast:
12	chr16:73030394..73031222-chr16:73049439..73050209,2	MCF-7	breast:
13	chr16:73027345..73035402-chr16:73051107..73057309,10	MCF-7	breast:
14	chr16:72962942..72963631-chr16:73030511..73031261,2	MCF-7	breast:
15	chr16:72909280..72909784-chr16:73030360..73030884,2	MCF-7	breast:
16	chr16:72907863..72909574-chr16:73028864..73030921,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction
ENSG00000272330	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73594738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594766	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594767	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594773	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594775	1.00[AMR][1000 genomes]
rs8054685	1.00[AMR][1000 genomes]
rs8061023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs876726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73019000-73035200	Enhancers	Placenta	Placenta
2	chr16:73019800-73031800	Enhancers	Fetal Lung	lung
3	chr16:73023200-73034800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr16:73023800-73033600	Weak transcription	Brain Angular Gyrus	brain
5	chr16:73023800-73035000	Enhancers	Psoas Muscle	Psoas
6	chr16:73024200-73035000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr16:73024400-73031400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr16:73024400-73033400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr16:73024600-73032000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr16:73025600-73031800	Enhancers	Pancreas	Pancrea
11	chr16:73026400-73034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:73026600-73030600	Weak transcription	Osteobl	bone
13	chr16:73026600-73030800	Weak transcription	Fetal Kidney	kidney
14	chr16:73026600-73031000	Weak transcription	NHDF-Ad	bronchial
15	chr16:73026600-73031200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr16:73026600-73032800	Weak transcription	Fetal Stomach	stomach
17	chr16:73027000-73033400	Weak transcription	Brain Anterior Caudate	brain
18	chr16:73027400-73030600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr16:73027400-73031800	Enhancers	Small Intestine	intestine
20	chr16:73027400-73033400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr16:73027400-73034600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr16:73027600-73030800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr16:73027600-73033600	Weak transcription	Brain Germinal Matrix	brain
24	chr16:73027800-73030800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr16:73027800-73031000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr16:73027800-73031200	Weak transcription	NHLF	lung
27	chr16:73027800-73033400	Weak transcription	Brain Hippocampus Middle	brain
28	chr16:73027800-73033600	Weak transcription	Fetal Heart	heart
29	chr16:73028000-73033400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr16:73028400-73031800	Enhancers	Gastric	stomach
31	chr16:73028600-73030600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:73028600-73033800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:73029000-73031200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr16:73029000-73033000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr16:73029200-73030600	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr16:73029200-73031800	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr16:73029200-73032600	Enhancers	Lung	lung
38	chr16:73029400-73031200	Enhancers	Stomach Mucosa	stomach
39	chr16:73029400-73031400	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr16:73029400-73031600	Enhancers	Fetal Intestine Large	intestine
41	chr16:73029600-73030600	Enhancers	Hela-S3	cervix
42	chr16:73029600-73031000	Enhancers	Colon Smooth Muscle	Colon
43	chr16:73029600-73033400	Weak transcription	Brain Substantia Nigra	brain
44	chr16:73029600-73033800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr16:73029800-73030800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr16:73029800-73031000	Weak transcription	Left Ventricle	heart
47	chr16:73029800-73031200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr16:73029800-73033600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr16:73029800-73033600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:73029800-73034000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links