Variant report

Variant	rs73594767
Chromosome Location	chr16:73058163-73058164
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:72958530..72960717-chr16:73056358..73059104,2	MCF-7	breast:
2	chr16:73038664..73040409-chr16:73056174..73058172,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-44L9.1.1-13	chr16:73056076-73058767	ncRnaDb_ncrna_FR229340_1

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73594729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594738	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594766	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054685	1.00[AMR][1000 genomes]
rs8061023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs876726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73049400-73069200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:73051200-73058200	Weak transcription	Colonic Mucosa	Colon
3	chr16:73051200-73059200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr16:73052400-73060000	Enhancers	Right Atrium	heart
5	chr16:73052400-73064400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr16:73052800-73060000	Enhancers	Pancreas	Pancrea
7	chr16:73053600-73062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:73054000-73063800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr16:73054600-73058200	Weak transcription	Spleen	Spleen
10	chr16:73054600-73058800	Weak transcription	Esophagus	oesophagus
11	chr16:73054600-73059200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr16:73054600-73062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:73054600-73065200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr16:73054800-73058600	Weak transcription	HSMMtube	muscle
15	chr16:73054800-73059000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr16:73054800-73059200	Weak transcription	Small Intestine	intestine
17	chr16:73054800-73060000	Weak transcription	GM12878-XiMat	blood
18	chr16:73054800-73061400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr16:73055000-73058200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:73055000-73058200	Weak transcription	Adipose Nuclei	Adipose
21	chr16:73055000-73058400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr16:73055000-73058600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:73055000-73059000	Weak transcription	Aorta	Aorta
24	chr16:73055000-73059000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr16:73055000-73059000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr16:73055000-73059200	Weak transcription	Stomach Mucosa	stomach
27	chr16:73055000-73061200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr16:73055200-73058800	Weak transcription	Brain Substantia Nigra	brain
29	chr16:73055200-73059000	Weak transcription	Osteobl	bone
30	chr16:73055200-73059200	Weak transcription	NH-A	brain
31	chr16:73055200-73061400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr16:73055200-73062200	Enhancers	A549	lung
33	chr16:73055200-73076400	Weak transcription	Brain Angular Gyrus	brain
34	chr16:73055400-73058200	Weak transcription	NHDF-Ad	bronchial
35	chr16:73055400-73059000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr16:73055400-73059200	Weak transcription	HUVEC	blood vessel
37	chr16:73055400-73062200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr16:73055400-73066600	Weak transcription	Hela-S3	cervix
39	chr16:73056000-73058200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr16:73056000-73058800	Weak transcription	HSMM	muscle
41	chr16:73056400-73058200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr16:73056400-73058200	Weak transcription	Fetal Muscle Leg	muscle
43	chr16:73056400-73058400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:73056600-73058400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr16:73056600-73058800	Genic enhancers	Stomach Smooth Muscle	stomach
46	chr16:73056800-73059000	Weak transcription	Liver	Liver
47	chr16:73057000-73060000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr16:73057200-73058200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr16:73057200-73058200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr16:73057200-73058200	Genic enhancers	Fetal Stomach	stomach

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