Variant report

Variant	rs73594766
Chromosome Location	chr16:73054816-73054817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:73042642..73045577-chr16:73052089..73055378,3	MCF-7	breast:
2	chr16:73052543..73056273-chr16:73069076..73072380,4	MCF-7	breast:
3	chr16:73052788..73055370-chr16:73088414..73091315,3	MCF-7	breast:
4	chr16:73027345..73035402-chr16:73051107..73057309,10	MCF-7	breast:
5	chr16:73052296..73055168-chr16:73058729..73060929,2	K562	blood:
6	chr16:73053724..73055547-chr16:73055724..73057755,2	MCF-7	breast:
7	chr16:73048377..73052863-chr16:73053930..73057468,5	MCF-7	breast:
8	chr16:73052216..73056148-chr16:73081555..73084344,4	MCF-7	breast:
9	chr16:73020484..73022206-chr16:73053719..73056599,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73594729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594738	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594767	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594773	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054685	1.00[AMR][1000 genomes]
rs8061023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs876726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73049400-73069200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:73049600-73056800	Enhancers	Psoas Muscle	Psoas
3	chr16:73051200-73058200	Weak transcription	Colonic Mucosa	Colon
4	chr16:73051200-73059200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr16:73051400-73057800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr16:73052200-73055400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr16:73052400-73055200	Enhancers	Brain Substantia Nigra	brain
8	chr16:73052400-73056400	Enhancers	Colon Smooth Muscle	Colon
9	chr16:73052400-73060000	Enhancers	Right Atrium	heart
10	chr16:73052400-73064400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr16:73052600-73055000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr16:73052600-73055200	Flanking Active TSS	A549	lung
13	chr16:73052600-73055400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr16:73052600-73055400	Enhancers	NHDF-Ad	bronchial
15	chr16:73052800-73055000	Enhancers	Brain Hippocampus Middle	brain
16	chr16:73052800-73055000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr16:73052800-73055000	Enhancers	Gastric	stomach
18	chr16:73052800-73055400	Enhancers	HUVEC	blood vessel
19	chr16:73052800-73056200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr16:73052800-73060000	Enhancers	Pancreas	Pancrea
21	chr16:73053000-73055000	Enhancers	Brain Anterior Caudate	brain
22	chr16:73053000-73055200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:73053200-73055200	Enhancers	Brain Angular Gyrus	brain
24	chr16:73053200-73056400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr16:73053400-73055000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr16:73053400-73055000	Flanking Active TSS	Hela-S3	cervix
27	chr16:73053400-73055000	Enhancers	HMEC	breast
28	chr16:73053400-73055200	Enhancers	Liver	Liver
29	chr16:73053400-73055400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr16:73053400-73055400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr16:73053600-73055000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr16:73053600-73062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr16:73054000-73056000	Weak transcription	Right Ventricle	heart
34	chr16:73054000-73058000	Weak transcription	Fetal Kidney	kidney
35	chr16:73054000-73063800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr16:73054200-73055200	Enhancers	Osteobl	bone
37	chr16:73054200-73055400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr16:73054200-73055400	Enhancers	NHLF	lung
39	chr16:73054200-73056000	Weak transcription	Left Ventricle	heart
40	chr16:73054200-73057200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr16:73054400-73055000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr16:73054400-73055000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr16:73054400-73055000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr16:73054400-73055000	Enhancers	Adipose Nuclei	Adipose
45	chr16:73054400-73055000	Enhancers	Aorta	Aorta
46	chr16:73054400-73055200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr16:73054400-73056200	Weak transcription	Fetal Stomach	stomach
48	chr16:73054600-73055000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:73054600-73055000	Enhancers	Duodenum Mucosa	Duodenum
50	chr16:73054600-73055200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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