Variant report

Variant	rs73594773
Chromosome Location	chr16:73061437-73061438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73060861..73063246-chr16:73064897..73067005,2	K562	blood:
2	chr16:73061047..73064506-chr16:73066434..73068183,3	MCF-7	breast:
3	chr16:72959073..72962236-chr16:73060952..73063726,3	MCF-7	breast:
4	chr16:73059653..73061872-chr16:74329579..74331696,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261404	Chromatin interaction
ENSG00000103035	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73594729	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594738	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594766	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594775	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054685	1.00[AMR][1000 genomes]
rs8061023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs876726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73049400-73069200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:73052400-73064400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr16:73053600-73062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:73054000-73063800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr16:73054600-73062000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr16:73054600-73065200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr16:73055200-73062200	Enhancers	A549	lung
8	chr16:73055200-73076400	Weak transcription	Brain Angular Gyrus	brain
9	chr16:73055400-73062200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:73055400-73066600	Weak transcription	Hela-S3	cervix
11	chr16:73057200-73063400	Enhancers	Psoas Muscle	Psoas
12	chr16:73057800-73063400	Enhancers	Left Ventricle	heart
13	chr16:73058200-73062200	Weak transcription	Fetal Thymus	thymus
14	chr16:73058800-73061600	Enhancers	HSMM	muscle
15	chr16:73059000-73072000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr16:73059200-73062600	Enhancers	HSMMtube	muscle
17	chr16:73059400-73061800	Enhancers	Fetal Heart	heart
18	chr16:73059400-73063000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr16:73059400-73065400	Weak transcription	Brain Germinal Matrix	brain
20	chr16:73059400-73076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr16:73059600-73061600	Weak transcription	Stomach Mucosa	stomach
22	chr16:73059600-73062000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:73059600-73062200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:73059600-73066600	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:73059600-73067000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr16:73059600-73069800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr16:73059800-73065200	Weak transcription	Fetal Brain Female	brain
28	chr16:73059800-73066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr16:73059800-73066000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr16:73059800-73069600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr16:73059800-73070000	Weak transcription	Colonic Mucosa	Colon
32	chr16:73060000-73061800	Weak transcription	Esophagus	oesophagus
33	chr16:73060000-73061800	Weak transcription	Right Atrium	heart
34	chr16:73060000-73061800	Weak transcription	Spleen	Spleen
35	chr16:73060000-73062000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr16:73060000-73062000	Weak transcription	HUVEC	blood vessel
37	chr16:73060000-73062600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr16:73060000-73064800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr16:73060000-73064800	Weak transcription	Brain Anterior Caudate	brain
40	chr16:73060000-73064800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr16:73060000-73065200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr16:73060000-73066200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr16:73060000-73066800	Weak transcription	Aorta	Aorta
44	chr16:73060000-73067200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr16:73060000-73067800	Weak transcription	Brain Substantia Nigra	brain
46	chr16:73060200-73061600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr16:73060400-73061800	Weak transcription	Lung	lung
48	chr16:73060400-73062200	Weak transcription	Right Ventricle	heart
49	chr16:73060600-73061600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr16:73060600-73061800	Weak transcription	Fetal Muscle Trunk	muscle

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