Variant report

Variant	rs73594775
Chromosome Location	chr16:73062383-73062384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:73060861..73063246-chr16:73064897..73067005,2	K562	blood:
2	chr16:73061921..73064545-chr16:73083761..73085497,2	K562	blood:
3	chr16:73061047..73064506-chr16:73066434..73068183,3	MCF-7	breast:
4	chr16:72959073..72962236-chr16:73060952..73063726,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73594729	1.00[AMR][1000 genomes]
rs73594738	1.00[AMR][1000 genomes]
rs73594766	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594767	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054685	1.00[AMR][1000 genomes]
rs8061023	1.00[AMR][1000 genomes]
rs876726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73049400-73069200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:73052400-73064400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr16:73054000-73063800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr16:73054600-73065200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr16:73055200-73076400	Weak transcription	Brain Angular Gyrus	brain
6	chr16:73055400-73066600	Weak transcription	Hela-S3	cervix
7	chr16:73057200-73063400	Enhancers	Psoas Muscle	Psoas
8	chr16:73057800-73063400	Enhancers	Left Ventricle	heart
9	chr16:73059000-73072000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:73059200-73062600	Enhancers	HSMMtube	muscle
11	chr16:73059400-73063000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr16:73059400-73065400	Weak transcription	Brain Germinal Matrix	brain
13	chr16:73059400-73076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:73059600-73066600	Weak transcription	Brain Hippocampus Middle	brain
15	chr16:73059600-73067000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr16:73059600-73069800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr16:73059800-73065200	Weak transcription	Fetal Brain Female	brain
18	chr16:73059800-73066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr16:73059800-73066000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr16:73059800-73069600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:73059800-73070000	Weak transcription	Colonic Mucosa	Colon
22	chr16:73060000-73062600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:73060000-73064800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr16:73060000-73064800	Weak transcription	Brain Anterior Caudate	brain
25	chr16:73060000-73064800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr16:73060000-73065200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr16:73060000-73066200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr16:73060000-73066800	Weak transcription	Aorta	Aorta
29	chr16:73060000-73067200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr16:73060000-73067800	Weak transcription	Brain Substantia Nigra	brain
31	chr16:73060600-73064800	Genic enhancers	HepG2	liver
32	chr16:73060600-73072600	Enhancers	Fetal Lung	lung
33	chr16:73060800-73062400	Enhancers	Liver	Liver
34	chr16:73061000-73063200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr16:73061000-73063400	Enhancers	Stomach Smooth Muscle	stomach
36	chr16:73061200-73062400	Enhancers	NHLF	lung
37	chr16:73061200-73062600	Enhancers	Fetal Muscle Leg	muscle
38	chr16:73061200-73062600	Enhancers	Ovary	ovary
39	chr16:73061200-73063000	Enhancers	Duodenum Mucosa	Duodenum
40	chr16:73061200-73063200	Enhancers	Fetal Intestine Large	intestine
41	chr16:73061200-73063200	Enhancers	Pancreas	Pancrea
42	chr16:73061200-73064800	Weak transcription	NHDF-Ad	bronchial
43	chr16:73061200-73070000	Enhancers	Placenta	Placenta
44	chr16:73061400-73062600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr16:73061400-73062800	Enhancers	Placenta Amnion	Placenta Amnion
46	chr16:73061400-73063200	Enhancers	Fetal Intestine Small	intestine
47	chr16:73061400-73064400	Enhancers	Gastric	stomach
48	chr16:73061400-73066200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr16:73061600-73062800	Enhancers	Stomach Mucosa	stomach
50	chr16:73061800-73062400	Enhancers	Right Atrium	heart

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