Variant report

Variant	rs73622789
Chromosome Location	chr19:37662299-37662300
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37662285..37665074-chr19:37707652..37711059,3	K562	blood:

Variant related genes	Relation type
ENSG00000188283	Chromatin interaction
ENSG00000245680	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs35676021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57026824	1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	1.00[AMR][1000 genomes]
rs59974370	1.00[AMR][1000 genomes]
rs60155022	1.00[AMR][1000 genomes]
rs61423771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73622799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73624900	1.00[AMR][1000 genomes]
rs73625218	1.00[AMR][1000 genomes]
rs73627710	1.00[AMR][1000 genomes]
rs73627726	1.00[AMR][1000 genomes]
rs73627732	1.00[AMR][1000 genomes]
rs73627757	1.00[AMR][1000 genomes]
rs73627762	1.00[AMR][1000 genomes]
rs73627764	1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	1.00[AMR][1000 genomes]
rs73629637	1.00[AMR][1000 genomes]
rs73629646	1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	1.00[AMR][1000 genomes]
rs73631027	1.00[AMR][1000 genomes]
rs73631041	1.00[AMR][1000 genomes]
rs73631044	1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	esv3433517	chr19:37643755-37675928	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37639400-37663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37643200-37662400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:37651200-37663000	Weak transcription	HSMMtube	muscle
4	chr19:37652200-37662800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr19:37652600-37663000	Weak transcription	NH-A	brain
6	chr19:37652800-37663200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr19:37656000-37662800	Weak transcription	HMEC	breast
8	chr19:37656400-37663200	Weak transcription	Stomach Mucosa	stomach
9	chr19:37657400-37662400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr19:37657600-37662400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:37658000-37662800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr19:37658800-37663200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:37659400-37663000	Weak transcription	Fetal Thymus	thymus
14	chr19:37659600-37662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr19:37659800-37662800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr19:37660600-37662800	Weak transcription	NHDF-Ad	bronchial
17	chr19:37660600-37662800	Weak transcription	NHEK	skin
18	chr19:37660800-37662400	Weak transcription	Fetal Heart	heart
19	chr19:37660800-37662600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr19:37660800-37662600	Weak transcription	Colonic Mucosa	Colon
21	chr19:37660800-37662800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr19:37660800-37662800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr19:37660800-37663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:37660800-37663000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr19:37660800-37663200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:37660800-37663200	Weak transcription	Small Intestine	intestine
27	chr19:37661000-37662600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr19:37661000-37662800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:37661000-37662800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:37661000-37662800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr19:37661000-37663000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:37661000-37663000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr19:37661000-37663000	Weak transcription	Brain Anterior Caudate	brain
34	chr19:37661000-37663000	Weak transcription	Brain Substantia Nigra	brain
35	chr19:37661000-37663000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr19:37661000-37663000	Weak transcription	NHLF	lung
37	chr19:37661000-37663200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr19:37661000-37663200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr19:37661000-37663200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr19:37661000-37663200	Weak transcription	Aorta	Aorta
41	chr19:37661000-37663200	Weak transcription	Esophagus	oesophagus
42	chr19:37661000-37663200	Weak transcription	Gastric	stomach
43	chr19:37661000-37663200	Weak transcription	Ovary	ovary
44	chr19:37661000-37663200	Weak transcription	Pancreas	Pancrea
45	chr19:37661000-37663200	Weak transcription	Psoas Muscle	Psoas
46	chr19:37661000-37663200	Weak transcription	HSMM	muscle
47	chr19:37661200-37662400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr19:37661200-37662600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr19:37661200-37662600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr19:37661200-37662600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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