Variant report
Variant | rs73627802 |
---|---|
Chromosome Location | chr19:37797399-37797400 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs2081095 | 1.00[AMR][1000 genomes] |
rs35676021 | 1.00[AMR][1000 genomes] |
rs57026824 | 1.00[AMR][1000 genomes] |
rs57558227 | 1.00[AMR][1000 genomes] |
rs57991649 | 1.00[AMR][1000 genomes] |
rs58356286 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58874386 | 1.00[AMR][1000 genomes] |
rs58889235 | 1.00[AMR][1000 genomes] |
rs59974370 | 1.00[AMR][1000 genomes] |
rs60155022 | 1.00[AMR][1000 genomes] |
rs61423771 | 1.00[AMR][1000 genomes] |
rs73617110 | 1.00[AMR][1000 genomes] |
rs73617115 | 1.00[AMR][1000 genomes] |
rs73617116 | 1.00[AMR][1000 genomes] |
rs73622736 | 1.00[AMR][1000 genomes] |
rs73622789 | 1.00[AMR][1000 genomes] |
rs73622799 | 1.00[AMR][1000 genomes] |
rs73624803 | 1.00[AMR][1000 genomes] |
rs73624816 | 1.00[AMR][1000 genomes] |
rs73624900 | 1.00[AMR][1000 genomes] |
rs73625218 | 1.00[AMR][1000 genomes] |
rs73627710 | 1.00[AMR][1000 genomes] |
rs73627726 | 1.00[AMR][1000 genomes] |
rs73627732 | 1.00[AMR][1000 genomes] |
rs73627757 | 1.00[AMR][1000 genomes] |
rs73627762 | 1.00[AMR][1000 genomes] |
rs73627764 | 1.00[AMR][1000 genomes] |
rs73627796 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73629606 | 1.00[AMR][1000 genomes] |
rs73629637 | 1.00[AMR][1000 genomes] |
rs73629646 | 1.00[AMR][1000 genomes] |
rs73629665 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73629668 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73629679 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73631014 | 1.00[AMR][1000 genomes] |
rs73631027 | 1.00[AMR][1000 genomes] |
rs73631041 | 1.00[AMR][1000 genomes] |
rs73631044 | 1.00[AMR][1000 genomes] |
rs73631045 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73631050 | 1.00[AMR][1000 genomes] |
rs73631060 | 1.00[AMR][1000 genomes] |
rs73631066 | 1.00[AMR][1000 genomes] |
rs73631070 | 1.00[AMR][1000 genomes] |
rs73631071 | 1.00[AMR][1000 genomes] |
rs73631080 | 1.00[AMR][1000 genomes] |
rs73631082 | 1.00[AMR][1000 genomes] |
rs73631084 | 1.00[AMR][1000 genomes] |
rs73631087 | 1.00[AMR][1000 genomes] |
rs73632220 | 1.00[AMR][1000 genomes] |
rs73632224 | 1.00[AMR][1000 genomes] |
rs73632231 | 1.00[AMR][1000 genomes] |
rs73632248 | 1.00[AMR][1000 genomes] |
rs73632252 | 1.00[AMR][1000 genomes] |
rs73632256 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv918028 | chr19:37020645-38014526 | Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
2 | esv3507199 | chr19:37284708-37805639 | Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
3 | esv3507200 | chr19:37284708-37805639 | ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
4 | esv3520361 | chr19:37745067-37811325 | Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | esv3520362 | chr19:37745067-37811325 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv978811 | chr19:37749967-37820517 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
7 | esv2757695 | chr19:37794850-38051606 | Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
8 | esv2758759 | chr19:37794850-38051606 | ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:37794400-37797400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr19:37794400-37798400 | ZNF genes & repeats | Fetal Brain Female | brain |
3 | chr19:37796000-37801000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |