Variant report

Variant	rs73631084
Chromosome Location	chr19:37954007-37954008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37944275..37946882-chr19:37951958..37954402,2	K562	blood:

Variant related genes	Relation type
ENSG00000196437	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs2081095	1.00[AMR][1000 genomes]
rs57026824	1.00[AMR][1000 genomes]
rs57558227	1.00[AMR][1000 genomes]
rs57653286	1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58181180	1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs59974370	1.00[AMR][1000 genomes]
rs60155022	1.00[AMR][1000 genomes]
rs73617110	1.00[AMR][1000 genomes]
rs73617115	1.00[AMR][1000 genomes]
rs73617116	1.00[AMR][1000 genomes]
rs73617118	1.00[AMR][1000 genomes]
rs73617123	1.00[AMR][1000 genomes]
rs73617125	1.00[AMR][1000 genomes]
rs73617129	1.00[AMR][1000 genomes]
rs73617131	1.00[AMR][1000 genomes]
rs73617141	1.00[AMR][1000 genomes]
rs73617156	1.00[AMR][1000 genomes]
rs73617163	1.00[AMR][1000 genomes]
rs73617168	1.00[AMR][1000 genomes]
rs73617173	1.00[AMR][1000 genomes]
rs73617175	1.00[AMR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AMR][1000 genomes]
rs73618986	1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AMR][1000 genomes]
rs73621506	1.00[AMR][1000 genomes]
rs73621518	1.00[AMR][1000 genomes]
rs73621526	1.00[AMR][1000 genomes]
rs73621530	1.00[AMR][1000 genomes]
rs73621533	1.00[AMR][1000 genomes]
rs73621535	1.00[AMR][1000 genomes]
rs73621536	1.00[AMR][1000 genomes]
rs73621543	1.00[AMR][1000 genomes]
rs73621545	1.00[AMR][1000 genomes]
rs73621570	1.00[AMR][1000 genomes]
rs73621578	1.00[AMR][1000 genomes]
rs73621580	1.00[AMR][1000 genomes]
rs73621584	1.00[AMR][1000 genomes]
rs73624900	1.00[AMR][1000 genomes]
rs73627710	1.00[AMR][1000 genomes]
rs73627726	1.00[AMR][1000 genomes]
rs73627732	1.00[AMR][1000 genomes]
rs73627757	1.00[AMR][1000 genomes]
rs73627762	1.00[AMR][1000 genomes]
rs73627764	1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	1.00[AMR][1000 genomes]
rs73629637	1.00[AMR][1000 genomes]
rs73629646	1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	1.00[AMR][1000 genomes]
rs73631027	1.00[AMR][1000 genomes]
rs73631041	1.00[AMR][1000 genomes]
rs73631044	1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631060	1.00[AMR][1000 genomes]
rs73631066	1.00[AMR][1000 genomes]
rs73631070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631071	1.00[AMR][1000 genomes]
rs73631080	1.00[AMR][1000 genomes]
rs73631082	1.00[AMR][1000 genomes]
rs73631087	1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AMR][1000 genomes]
rs73632248	1.00[AMR][1000 genomes]
rs73632252	1.00[AMR][1000 genomes]
rs73632256	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
2	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37938000-37956000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:37938200-37956200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:37940800-37954200	ZNF genes & repeats	Brain Hippocampus Middle	brain
7	chr19:37940800-37956800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:37942400-37954400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr19:37942400-37954600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
10	chr19:37942400-37956000	ZNF genes & repeats	Fetal Lung	lung
11	chr19:37942400-37956200	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:37942400-37957200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:37942600-37956000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:37942600-37956600	ZNF genes & repeats	Dnd41	blood
15	chr19:37943600-37956800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr19:37944200-37957000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr19:37944600-37954400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
18	chr19:37944600-37954800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
19	chr19:37944600-37956200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr19:37944600-37956400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:37944600-37957000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr19:37944800-37954600	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr19:37944800-37956200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr19:37944800-37956200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr19:37944800-37957000	ZNF genes & repeats	A549	lung
26	chr19:37946200-37957400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr19:37946800-37956800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr19:37946800-37957000	Weak transcription	NH-A	brain
29	chr19:37946800-37957200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr19:37947600-37954200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr19:37947600-37955600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:37948800-37954200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
33	chr19:37949000-37954400	ZNF genes & repeats	Brain Anterior Caudate	brain
34	chr19:37949200-37955800	ZNF genes & repeats	Primary B cells from cord blood	blood
35	chr19:37949600-37957000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr19:37950000-37955400	Weak transcription	HUVEC	blood vessel
37	chr19:37950400-37954400	ZNF genes & repeats	Brain Germinal Matrix	brain
38	chr19:37950400-37955400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr19:37950600-37955400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr19:37950800-37954600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
41	chr19:37950800-37956200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr19:37951000-37954400	ZNF genes & repeats	Colon Smooth Muscle	Colon
43	chr19:37951000-37956000	ZNF genes & repeats	Ovary	ovary
44	chr19:37951200-37956200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
45	chr19:37951400-37954400	ZNF genes & repeats	Fetal Muscle Leg	muscle
46	chr19:37951400-37954800	ZNF genes & repeats	Fetal Brain Male	brain
47	chr19:37951400-37957400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr19:37951600-37954200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:37951600-37954600	Weak transcription	Pancreas	Pancrea
50	chr19:37951600-37955000	Weak transcription	Fetal Stomach	stomach

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