Variant report

Variant	rs73632248
Chromosome Location	chr19:38022807-38022808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs2081095	1.00[AMR][1000 genomes]
rs57172286	1.00[AMR][1000 genomes]
rs57558227	1.00[AMR][1000 genomes]
rs57653286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57676507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58181180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs60155022	1.00[AMR][1000 genomes]
rs73617110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617177	1.00[AFR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621514	1.00[AFR][1000 genomes]
rs73621518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	1.00[AMR][1000 genomes]
rs73629637	1.00[AMR][1000 genomes]
rs73629646	1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	1.00[AMR][1000 genomes]
rs73631027	1.00[AMR][1000 genomes]
rs73631041	1.00[AMR][1000 genomes]
rs73631044	1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AMR][1000 genomes]
rs73631066	1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	1.00[AMR][1000 genomes]
rs73631080	1.00[AMR][1000 genomes]
rs73631082	1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37999000-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:38002000-38028800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr19:38008800-38026600	Weak transcription	Fetal Heart	heart
4	chr19:38011600-38023600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr19:38014800-38024000	Weak transcription	Stomach Mucosa	stomach
6	chr19:38017400-38028800	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:38017800-38023800	Weak transcription	Placenta	Placenta
8	chr19:38017800-38024000	Strong transcription	Brain Hippocampus Middle	brain
9	chr19:38018400-38025000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:38020000-38023800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:38020000-38024000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr19:38020800-38023000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:38020800-38023000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr19:38021600-38024000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr19:38021600-38028800	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr19:38021600-38030200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr19:38021800-38023400	Strong transcription	Fetal Brain Female	brain
18	chr19:38021800-38023800	Strong transcription	Brain Substantia Nigra	brain
19	chr19:38021800-38028800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr19:38021800-38028800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:38021800-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:38021800-38028800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr19:38021800-38028800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr19:38021800-38029800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr19:38021800-38030000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:38021800-38030800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr19:38021800-38031600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:38022000-38023400	ZNF genes & repeats	Fetal Intestine Large	intestine
29	chr19:38022000-38025000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr19:38022000-38028400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:38022000-38028800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
32	chr19:38022000-38030600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
33	chr19:38022200-38025600	Strong transcription	Fetal Muscle Leg	muscle
34	chr19:38022200-38025800	ZNF genes & repeats	Pancreas	Pancrea
35	chr19:38022200-38026000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr19:38022200-38027200	Strong transcription	Right Ventricle	heart
37	chr19:38022200-38028600	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr19:38022200-38028600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr19:38022200-38028600	ZNF genes & repeats	Fetal Stomach	stomach
40	chr19:38022200-38028800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
41	chr19:38022200-38028800	ZNF genes & repeats	Esophagus	oesophagus
42	chr19:38022200-38028800	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr19:38022200-38028800	ZNF genes & repeats	Left Ventricle	heart
44	chr19:38022200-38028800	ZNF genes & repeats	Spleen	Spleen
45	chr19:38022200-38029400	ZNF genes & repeats	Aorta	Aorta
46	chr19:38022200-38029600	ZNF genes & repeats	Ovary	ovary
47	chr19:38022200-38030200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr19:38022200-38037000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
49	chr19:38022400-38024600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:38022400-38025000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

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