Variant report

Variant	rs73621536
Chromosome Location	chr19:38140304-38140305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38139680..38143169-chr19:38144520..38148177,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120784	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs2081095	1.00[AMR][1000 genomes]
rs57172286	1.00[AMR][1000 genomes]
rs57558227	1.00[AMR][1000 genomes]
rs57653286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57676507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58181180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs60155022	1.00[AMR][1000 genomes]
rs73617110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617177	1.00[AFR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621514	1.00[AFR][1000 genomes]
rs73621518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631041	1.00[AMR][1000 genomes]
rs73631044	1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AMR][1000 genomes]
rs73631066	1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	1.00[AMR][1000 genomes]
rs73631080	1.00[AMR][1000 genomes]
rs73631082	1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38121800-38140600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr19:38123600-38140800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:38123600-38141400	ZNF genes & repeats	Liver	Liver
4	chr19:38124600-38140800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr19:38124600-38142000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:38124800-38143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:38124800-38144400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:38125600-38143200	ZNF genes & repeats	A549	lung
9	chr19:38125800-38140800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr19:38126000-38141400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr19:38126200-38143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:38127200-38144600	Weak transcription	Hela-S3	cervix
13	chr19:38130000-38141600	Strong transcription	Osteobl	bone
14	chr19:38130400-38142200	ZNF genes & repeats	GM12878-XiMat	blood
15	chr19:38131000-38141000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:38131600-38141200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:38131800-38140600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr19:38133400-38140400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:38133600-38140600	Strong transcription	Fetal Stomach	stomach
20	chr19:38133600-38140800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr19:38133600-38142000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr19:38133800-38142000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr19:38134200-38144600	Weak transcription	NHLF	lung
24	chr19:38134400-38145000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr19:38134400-38145000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr19:38135000-38144200	Weak transcription	Fetal Heart	heart
27	chr19:38135200-38140400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr19:38135600-38141400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr19:38135600-38141600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr19:38135800-38144400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr19:38136600-38140800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr19:38136800-38140600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr19:38137000-38142000	ZNF genes & repeats	Fetal Intestine Small	intestine
34	chr19:38137200-38144400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr19:38137400-38141200	ZNF genes & repeats	Fetal Intestine Large	intestine
36	chr19:38138400-38145000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr19:38138600-38143200	Weak transcription	Fetal Brain Male	brain
38	chr19:38138600-38144000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr19:38138600-38144600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr19:38138600-38144600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr19:38138600-38144800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr19:38138600-38144800	Weak transcription	Right Ventricle	heart
43	chr19:38138800-38140600	Strong transcription	Fetal Lung	lung
44	chr19:38138800-38141000	Weak transcription	Colonic Mucosa	Colon
45	chr19:38138800-38144200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr19:38138800-38144200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr19:38138800-38144600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:38138800-38144600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr19:38138800-38144600	Weak transcription	Fetal Kidney	kidney
50	chr19:38138800-38144600	Weak transcription	HSMMtube	muscle

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