Variant report

Variant	rs60155022
Chromosome Location	chr19:37909988-37909989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs2081095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35676021	1.00[AMR][1000 genomes]
rs57026824	1.00[AMR][1000 genomes]
rs57558227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58181180	1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs59974370	1.00[AMR][1000 genomes]
rs61423771	1.00[AMR][1000 genomes]
rs73617110	1.00[AMR][1000 genomes]
rs73617115	1.00[AMR][1000 genomes]
rs73617116	1.00[AMR][1000 genomes]
rs73617118	1.00[AMR][1000 genomes]
rs73617123	1.00[AMR][1000 genomes]
rs73617125	1.00[AMR][1000 genomes]
rs73617129	1.00[AMR][1000 genomes]
rs73617131	1.00[AMR][1000 genomes]
rs73617141	1.00[AMR][1000 genomes]
rs73617156	1.00[AMR][1000 genomes]
rs73617163	1.00[AMR][1000 genomes]
rs73617168	1.00[AMR][1000 genomes]
rs73617173	1.00[AMR][1000 genomes]
rs73617175	1.00[AMR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AMR][1000 genomes]
rs73618986	1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AMR][1000 genomes]
rs73621506	1.00[AMR][1000 genomes]
rs73621518	1.00[AMR][1000 genomes]
rs73621526	1.00[AMR][1000 genomes]
rs73621530	1.00[AMR][1000 genomes]
rs73621533	1.00[AMR][1000 genomes]
rs73621535	1.00[AMR][1000 genomes]
rs73621536	1.00[AMR][1000 genomes]
rs73621543	1.00[AMR][1000 genomes]
rs73621545	1.00[AMR][1000 genomes]
rs73622736	1.00[AMR][1000 genomes]
rs73622789	1.00[AMR][1000 genomes]
rs73622799	1.00[AMR][1000 genomes]
rs73624803	1.00[AMR][1000 genomes]
rs73624816	1.00[AMR][1000 genomes]
rs73624900	1.00[AMR][1000 genomes]
rs73627710	1.00[AMR][1000 genomes]
rs73627726	1.00[AMR][1000 genomes]
rs73627732	1.00[AMR][1000 genomes]
rs73627757	1.00[AMR][1000 genomes]
rs73627762	1.00[AMR][1000 genomes]
rs73627764	1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629637	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631031	1.00[AFR][1000 genomes]
rs73631041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631066	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631080	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631082	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AMR][1000 genomes]
rs73632248	1.00[AMR][1000 genomes]
rs73632252	1.00[AMR][1000 genomes]
rs73632256	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv963044	chr19:37893588-37916743	ZNF genes & repeats Weak transcription Strong transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37910000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr19:37898000-37910400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37898000-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
5	chr19:37899200-37918800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:37900200-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:37902400-37910000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:37903000-37910200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr19:37903000-37910200	ZNF genes & repeats	Dnd41	blood
10	chr19:37903200-37925000	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr19:37903200-37927200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chr19:37905200-37913000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr19:37906400-37910000	ZNF genes & repeats	Brain Hippocampus Middle	brain
16	chr19:37906400-37913000	ZNF genes & repeats	Aorta	Aorta
17	chr19:37906400-37914000	ZNF genes & repeats	Left Ventricle	heart
18	chr19:37906600-37913800	ZNF genes & repeats	Ovary	ovary
19	chr19:37906600-37913800	ZNF genes & repeats	Psoas Muscle	Psoas
20	chr19:37906800-37910000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
21	chr19:37906800-37910000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:37906800-37910000	ZNF genes & repeats	Brain Substantia Nigra	brain
23	chr19:37906800-37910600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr19:37906800-37915400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
25	chr19:37906800-37918000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr19:37906800-37927000	ZNF genes & repeats	Fetal Brain Female	brain
27	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chr19:37907000-37910200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
29	chr19:37907000-37910400	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr19:37907600-37910000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
31	chr19:37907600-37910000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
32	chr19:37907600-37910000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
33	chr19:37907600-37925000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr19:37907600-37926600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
35	chr19:37907800-37910000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr19:37907800-37910000	ZNF genes & repeats	Brain Anterior Caudate	brain
37	chr19:37907800-37910000	ZNF genes & repeats	A549	lung
38	chr19:37907800-37915600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
39	chr19:37907800-37926000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr19:37908000-37913800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
41	chr19:37908400-37910400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr19:37908400-37911200	Weak transcription	HSMMtube	muscle
43	chr19:37908600-37911400	Weak transcription	Thymus	Thymus
44	chr19:37908800-37911200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:37909200-37910000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr19:37909200-37910000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
47	chr19:37909200-37910000	ZNF genes & repeats	Brain Angular Gyrus	brain
48	chr19:37909200-37910200	ZNF genes & repeats	Fetal Brain Male	brain
49	chr19:37909200-37910200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
50	chr19:37909200-37919400	ZNF genes & repeats	Fetal Lung	lung

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