Variant report

Variant	rs73627732
Chromosome Location	chr19:37718932-37718933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr19:37718931-37719278	A549	lung:	n/a	n/a
2	CTCF	chr19:37718890-37719299	MCF-7	breast:	n/a	n/a
3	CTCF	chr19:37718747-37719846	A549	lung:	n/a	n/a
4	RAD21	chr19:37718893-37719315	HCT-116	colon:	n/a	n/a
5	CTCF	chr19:37718888-37719257	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr19:37718833-37719264	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr19:37718927-37719258	T-47D	breast:	n/a	n/a
8	RAD21	chr19:37718930-37719292	A549	lung:	n/a	n/a
9	RAD21	chr19:37718910-37719328	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr19:37718888-37719241	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr19:37718840-37718990	GM12878	blood:	n/a	n/a
12	SMC3	chr19:37718825-37719259	SK-N-SH	brain:	n/a	n/a
13	RAD21	chr19:37718730-37719327	SK-N-SH	brain:	n/a	n/a
14	CTCF	chr19:37718776-37719480	SK-N-SH	brain:	n/a	n/a
15	CTCF	chr19:37718920-37719236	T-47D	breast:	n/a	n/a
16	PAX5	chr19:37718722-37718978	GM12878	blood:	n/a	n/a
17	CTCF	chr19:37718809-37719390	K562	blood:	n/a	n/a
18	ZNF143	chr19:37718928-37719278	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr19:37718896-37719258	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
ZNF383	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs2081095	1.00[AMR][1000 genomes]
rs35676021	1.00[AMR][1000 genomes]
rs57026824	1.00[AMR][1000 genomes]
rs57558227	1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs59974370	1.00[AMR][1000 genomes]
rs60155022	1.00[AMR][1000 genomes]
rs61423771	1.00[AMR][1000 genomes]
rs73622736	1.00[AMR][1000 genomes]
rs73622789	1.00[AMR][1000 genomes]
rs73622799	1.00[AMR][1000 genomes]
rs73624803	1.00[AMR][1000 genomes]
rs73624816	1.00[AMR][1000 genomes]
rs73624900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625218	1.00[AMR][1000 genomes]
rs73627710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73627726	1.00[AMR][1000 genomes]
rs73627757	1.00[AMR][1000 genomes]
rs73627762	1.00[AMR][1000 genomes]
rs73627764	1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	1.00[AMR][1000 genomes]
rs73629637	1.00[AMR][1000 genomes]
rs73629646	1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	1.00[AMR][1000 genomes]
rs73631027	1.00[AMR][1000 genomes]
rs73631041	1.00[AMR][1000 genomes]
rs73631044	1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AMR][1000 genomes]
rs73631066	1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	1.00[AMR][1000 genomes]
rs73631080	1.00[AMR][1000 genomes]
rs73631082	1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv961287	chr19:37708789-37742224	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a
12	nsv960833	chr19:37715348-37733416	Strong transcription ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37710000-37720800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:37710000-37721000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:37710000-37728600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:37710200-37719000	Weak transcription	HepG2	liver
5	chr19:37710200-37720800	Weak transcription	K562	blood
6	chr19:37710200-37723800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:37710200-37725600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr19:37710200-37725600	Weak transcription	Fetal Heart	heart
9	chr19:37710200-37728600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:37710400-37724200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:37710400-37744200	ZNF genes & repeats	Liver	Liver
12	chr19:37710600-37725600	Weak transcription	Fetal Brain Male	brain
13	chr19:37711000-37737000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:37711000-37737800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:37711200-37725000	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr19:37711200-37738200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr19:37711600-37719200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr19:37712200-37719600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:37713400-37720000	Strong transcription	Dnd41	blood
20	chr19:37713400-37728400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr19:37714600-37723400	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr19:37715200-37720800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr19:37715200-37724000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr19:37715200-37736600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr19:37715200-37740400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
26	chr19:37715400-37719800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr19:37715400-37719800	Strong transcription	Fetal Muscle Leg	muscle
28	chr19:37715400-37720000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr19:37715400-37720800	Strong transcription	Fetal Stomach	stomach
30	chr19:37715400-37724000	ZNF genes & repeats	A549	lung
31	chr19:37715400-37732600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
32	chr19:37715400-37738400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
33	chr19:37715600-37722800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr19:37715600-37723000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr19:37715600-37723400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr19:37715600-37727000	Strong transcription	Placenta	Placenta
37	chr19:37715600-37736000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr19:37715800-37719200	Strong transcription	Brain Anterior Caudate	brain
39	chr19:37715800-37720400	Strong transcription	Fetal Lung	lung
40	chr19:37715800-37738000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
41	chr19:37716000-37720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:37716000-37720000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr19:37716000-37720200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr19:37716000-37721000	ZNF genes & repeats	Fetal Intestine Large	intestine
45	chr19:37716000-37723800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr19:37716000-37736000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
47	chr19:37716200-37719000	Strong transcription	Colonic Mucosa	Colon
48	chr19:37716200-37719000	Strong transcription	Fetal Brain Female	brain
49	chr19:37716200-37719200	Strong transcription	Brain Hippocampus Middle	brain
50	chr19:37716200-37719200	Strong transcription	Placenta Amnion	Placenta Amnion

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