Variant report

Variant	rs73631071
Chromosome Location	chr19:37942723-37942724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37940909..37945428-chr19:37956901..37961014,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196437	Chromatin interaction
ENSG00000171827	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs2081095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57026824	1.00[AMR][1000 genomes]
rs57558227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57653286	1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58181180	1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs59974370	1.00[AMR][1000 genomes]
rs60155022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617110	1.00[AMR][1000 genomes]
rs73617115	1.00[AMR][1000 genomes]
rs73617116	1.00[AMR][1000 genomes]
rs73617118	1.00[AMR][1000 genomes]
rs73617123	1.00[AMR][1000 genomes]
rs73617125	1.00[AMR][1000 genomes]
rs73617129	1.00[AMR][1000 genomes]
rs73617131	1.00[AMR][1000 genomes]
rs73617141	1.00[AMR][1000 genomes]
rs73617156	1.00[AMR][1000 genomes]
rs73617163	1.00[AMR][1000 genomes]
rs73617168	1.00[AMR][1000 genomes]
rs73617173	1.00[AMR][1000 genomes]
rs73617175	1.00[AMR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AMR][1000 genomes]
rs73618986	1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AMR][1000 genomes]
rs73621506	1.00[AMR][1000 genomes]
rs73621518	1.00[AMR][1000 genomes]
rs73621526	1.00[AMR][1000 genomes]
rs73621530	1.00[AMR][1000 genomes]
rs73621533	1.00[AMR][1000 genomes]
rs73621535	1.00[AMR][1000 genomes]
rs73621536	1.00[AMR][1000 genomes]
rs73621543	1.00[AMR][1000 genomes]
rs73621545	1.00[AMR][1000 genomes]
rs73621570	1.00[AMR][1000 genomes]
rs73624803	1.00[AMR][1000 genomes]
rs73624816	1.00[AMR][1000 genomes]
rs73624900	1.00[AMR][1000 genomes]
rs73627710	1.00[AMR][1000 genomes]
rs73627726	1.00[AMR][1000 genomes]
rs73627732	1.00[AMR][1000 genomes]
rs73627757	1.00[AMR][1000 genomes]
rs73627762	1.00[AMR][1000 genomes]
rs73627764	1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	1.00[AMR][1000 genomes]
rs73629637	1.00[AMR][1000 genomes]
rs73629646	1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631031	0.89[AFR][1000 genomes]
rs73631041	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631044	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AMR][1000 genomes]
rs73632248	1.00[AMR][1000 genomes]
rs73632252	1.00[AMR][1000 genomes]
rs73632256	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
2	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37925000-37943400	Weak transcription	HSMM	muscle
5	chr19:37936000-37944800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:37938000-37956000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr19:37938200-37956200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr19:37938600-37951800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr19:37940800-37954200	ZNF genes & repeats	Brain Hippocampus Middle	brain
10	chr19:37940800-37956800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr19:37941000-37950200	ZNF genes & repeats	Colon Smooth Muscle	Colon
12	chr19:37941000-37952200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr19:37941400-37947400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:37942200-37946200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:37942200-37949200	ZNF genes & repeats	Brain Germinal Matrix	brain
16	chr19:37942400-37942800	ZNF genes & repeats	Fetal Brain Male	brain
17	chr19:37942400-37947000	ZNF genes & repeats	Brain Anterior Caudate	brain
18	chr19:37942400-37947400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr19:37942400-37954400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr19:37942400-37954600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr19:37942400-37956000	ZNF genes & repeats	Fetal Lung	lung
22	chr19:37942400-37956200	ZNF genes & repeats	Fetal Brain Female	brain
23	chr19:37942400-37957200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:37942600-37942800	ZNF genes & repeats	Left Ventricle	heart
25	chr19:37942600-37943000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:37942600-37943000	ZNF genes & repeats	A549	lung
27	chr19:37942600-37943200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
28	chr19:37942600-37946000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
29	chr19:37942600-37946800	ZNF genes & repeats	Fetal Muscle Leg	muscle
30	chr19:37942600-37946800	ZNF genes & repeats	Psoas Muscle	Psoas
31	chr19:37942600-37946800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
32	chr19:37942600-37947400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
33	chr19:37942600-37947600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
34	chr19:37942600-37947600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
35	chr19:37942600-37953800	ZNF genes & repeats	Brain Substantia Nigra	brain
36	chr19:37942600-37956000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr19:37942600-37956600	ZNF genes & repeats	Dnd41	blood

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