Variant report

Variant	rs73617156
Chromosome Location	chr19:38071752-38071753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38071504..38073615-chr19:38074702..38076775,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180479	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs2081095	1.00[AMR][1000 genomes]
rs57172286	1.00[AMR][1000 genomes]
rs57558227	1.00[AMR][1000 genomes]
rs57653286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57676507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58181180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs60155022	1.00[AMR][1000 genomes]
rs73617110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617177	1.00[AFR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621514	1.00[AFR][1000 genomes]
rs73621518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629646	1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	1.00[AMR][1000 genomes]
rs73631027	1.00[AMR][1000 genomes]
rs73631041	1.00[AMR][1000 genomes]
rs73631044	1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AMR][1000 genomes]
rs73631066	1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	1.00[AMR][1000 genomes]
rs73631080	1.00[AMR][1000 genomes]
rs73631082	1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38032400-38080800	ZNF genes & repeats	Liver	Liver
2	chr19:38032600-38075200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:38038000-38078400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:38038600-38079600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:38041200-38079600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:38045000-38078600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:38046400-38071800	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr19:38046600-38079600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
9	chr19:38047400-38078600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
10	chr19:38049200-38079600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:38051600-38077600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr19:38051600-38078800	ZNF genes & repeats	Fetal Brain Female	brain
13	chr19:38052200-38075200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
14	chr19:38052200-38078600	ZNF genes & repeats	Primary B cells from cord blood	blood
15	chr19:38053200-38078200	ZNF genes & repeats	Brain Germinal Matrix	brain
16	chr19:38053200-38078600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:38053400-38078400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
18	chr19:38059800-38078000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr19:38065200-38078800	ZNF genes & repeats	Colon Smooth Muscle	Colon
20	chr19:38065800-38078400	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr19:38065800-38078600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr19:38066000-38072000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
23	chr19:38067000-38077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr19:38068200-38078200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
25	chr19:38068400-38071800	ZNF genes & repeats	Brain Substantia Nigra	brain
26	chr19:38068400-38071800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
27	chr19:38068400-38073200	Weak transcription	HSMMtube	muscle
28	chr19:38068400-38073400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
29	chr19:38068400-38078000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
30	chr19:38068400-38078200	ZNF genes & repeats	Fetal Muscle Leg	muscle
31	chr19:38068400-38078400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr19:38068400-38078600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr19:38068400-38078800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
34	chr19:38068600-38071800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
35	chr19:38068600-38071800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
36	chr19:38068600-38071800	ZNF genes & repeats	Spleen	Spleen
37	chr19:38068600-38072000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
38	chr19:38068600-38075000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:38068600-38075000	ZNF genes & repeats	Thymus	Thymus
40	chr19:38068600-38076600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
41	chr19:38068600-38077600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
42	chr19:38068600-38078200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
43	chr19:38068600-38078400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
44	chr19:38068600-38080000	ZNF genes & repeats	Ovary	ovary
45	chr19:38068600-38080800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr19:38068800-38071800	ZNF genes & repeats	Colonic Mucosa	Colon
47	chr19:38068800-38075000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr19:38068800-38075200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr19:38068800-38075200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
50	chr19:38068800-38078200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links