Variant report

Variant	rs73621530
Chromosome Location	chr19:38132146-38132147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:38127960..38129547-chr19:38130452..38132977,2	K562	blood:
2	chr19:38130912..38133032-chr19:38155591..38157231,2	K562	blood:
3	chr19:38131156..38133498-chr19:38141254..38142957,2	MCF-7	breast:
4	chr19:38129742..38132534-chr19:38142978..38144992,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs2081095	1.00[AMR][1000 genomes]
rs57172286	1.00[AMR][1000 genomes]
rs57558227	1.00[AMR][1000 genomes]
rs57653286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57676507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58181180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs60155022	1.00[AMR][1000 genomes]
rs73617110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617177	1.00[AFR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621514	1.00[AFR][1000 genomes]
rs73621518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631014	1.00[AMR][1000 genomes]
rs73631027	1.00[AMR][1000 genomes]
rs73631041	1.00[AMR][1000 genomes]
rs73631044	1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AMR][1000 genomes]
rs73631066	1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	1.00[AMR][1000 genomes]
rs73631080	1.00[AMR][1000 genomes]
rs73631082	1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38121800-38139200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:38121800-38140600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:38123400-38138800	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:38123600-38133600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr19:38123600-38140000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:38123600-38140800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:38123600-38141400	ZNF genes & repeats	Liver	Liver
8	chr19:38124000-38133000	ZNF genes & repeats	Fetal Brain Female	brain
9	chr19:38124000-38134200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr19:38124400-38135000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr19:38124600-38140800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr19:38124600-38142000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr19:38124800-38134600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
14	chr19:38124800-38134800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr19:38124800-38136400	ZNF genes & repeats	Fetal Lung	lung
16	chr19:38124800-38143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:38124800-38144400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:38125000-38133000	ZNF genes & repeats	Dnd41	blood
19	chr19:38125000-38135600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
20	chr19:38125000-38136800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr19:38125600-38132200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
22	chr19:38125600-38133000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr19:38125600-38143200	ZNF genes & repeats	A549	lung
24	chr19:38125800-38133000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:38125800-38133000	ZNF genes & repeats	Fetal Muscle Leg	muscle
26	chr19:38125800-38133000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr19:38125800-38133600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chr19:38125800-38135000	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr19:38125800-38139600	ZNF genes & repeats	Colon Smooth Muscle	Colon
30	chr19:38125800-38140800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr19:38126000-38132200	ZNF genes & repeats	Fetal Intestine Large	intestine
32	chr19:38126000-38133000	ZNF genes & repeats	Colonic Mucosa	Colon
33	chr19:38126000-38135200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr19:38126000-38135800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr19:38126000-38141400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr19:38126200-38143200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr19:38126400-38139400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
38	chr19:38127200-38132400	Weak transcription	Fetal Heart	heart
39	chr19:38127200-38144600	Weak transcription	Hela-S3	cervix
40	chr19:38127600-38133600	Weak transcription	Right Ventricle	heart
41	chr19:38127800-38132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr19:38128200-38133200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
43	chr19:38128600-38132200	Weak transcription	Placenta	Placenta
44	chr19:38128600-38132400	Weak transcription	Pancreas	Pancrea
45	chr19:38128600-38132400	Weak transcription	Thymus	Thymus
46	chr19:38129200-38132600	ZNF genes & repeats	HepG2	liver
47	chr19:38129200-38138400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr19:38129200-38139600	Strong transcription	HSMM	muscle
49	chr19:38129400-38132400	Weak transcription	Fetal Thymus	thymus
50	chr19:38129600-38132600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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