Variant report

Variant	rs73631087
Chromosome Location	chr19:37956149-37956150
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:37955552..37960531-chr19:37996583..37998774,4	MCF-7	breast:
2	chr19:37945213..37949636-chr19:37955245..37960324,5	K562	blood:
3	chr19:37861003..37862628-chr19:37955117..37957748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196437	Chromatin interaction
ENSG00000266916	Chromatin interaction
ENSG00000188227	Chromatin interaction
ENSG00000189164	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs2081095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57026824	1.00[AMR][1000 genomes]
rs57558227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57653286	1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58181180	1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs59974370	1.00[AMR][1000 genomes]
rs60155022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617110	1.00[AMR][1000 genomes]
rs73617115	1.00[AMR][1000 genomes]
rs73617116	1.00[AMR][1000 genomes]
rs73617118	1.00[AMR][1000 genomes]
rs73617123	1.00[AMR][1000 genomes]
rs73617125	1.00[AMR][1000 genomes]
rs73617129	1.00[AMR][1000 genomes]
rs73617131	1.00[AMR][1000 genomes]
rs73617141	1.00[AMR][1000 genomes]
rs73617156	1.00[AMR][1000 genomes]
rs73617163	1.00[AMR][1000 genomes]
rs73617168	1.00[AMR][1000 genomes]
rs73617173	1.00[AMR][1000 genomes]
rs73617175	1.00[AMR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AMR][1000 genomes]
rs73618986	1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AMR][1000 genomes]
rs73621506	1.00[AMR][1000 genomes]
rs73621518	1.00[AMR][1000 genomes]
rs73621526	1.00[AMR][1000 genomes]
rs73621530	1.00[AMR][1000 genomes]
rs73621533	1.00[AMR][1000 genomes]
rs73621535	1.00[AMR][1000 genomes]
rs73621536	1.00[AMR][1000 genomes]
rs73621543	1.00[AMR][1000 genomes]
rs73621545	1.00[AMR][1000 genomes]
rs73621570	1.00[AMR][1000 genomes]
rs73621578	1.00[AMR][1000 genomes]
rs73621580	1.00[AMR][1000 genomes]
rs73621584	1.00[AMR][1000 genomes]
rs73624900	1.00[AMR][1000 genomes]
rs73627710	1.00[AMR][1000 genomes]
rs73627726	1.00[AMR][1000 genomes]
rs73627732	1.00[AMR][1000 genomes]
rs73627757	1.00[AMR][1000 genomes]
rs73627762	1.00[AMR][1000 genomes]
rs73627764	1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	1.00[AMR][1000 genomes]
rs73629637	1.00[AMR][1000 genomes]
rs73629646	1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631031	0.89[AFR][1000 genomes]
rs73631041	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631044	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AMR][1000 genomes]
rs73632248	1.00[AMR][1000 genomes]
rs73632252	1.00[AMR][1000 genomes]
rs73632256	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
2	chr19:37938200-37956200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37940800-37956800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:37942400-37956200	ZNF genes & repeats	Fetal Brain Female	brain
5	chr19:37942400-37957200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:37942600-37956600	ZNF genes & repeats	Dnd41	blood
7	chr19:37943600-37956800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37944200-37957000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr19:37944600-37956200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr19:37944600-37956400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:37944600-37957000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr19:37944800-37956200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr19:37944800-37956200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr19:37944800-37957000	ZNF genes & repeats	A549	lung
15	chr19:37946200-37957400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr19:37946800-37956800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr19:37946800-37957000	Weak transcription	NH-A	brain
18	chr19:37946800-37957200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr19:37949600-37957000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr19:37950800-37956200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr19:37951200-37956200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
22	chr19:37951400-37957400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr19:37951600-37957200	Weak transcription	Esophagus	oesophagus
24	chr19:37951600-37957400	Weak transcription	Gastric	stomach
25	chr19:37951800-37956200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr19:37951800-37957200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr19:37951800-37957200	Weak transcription	Colonic Mucosa	Colon
28	chr19:37952800-37956200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr19:37952800-37956200	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr19:37953200-37956200	Strong transcription	Left Ventricle	heart
31	chr19:37953200-37956400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr19:37953400-37956200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr19:37953400-37956200	Strong transcription	Fetal Thymus	thymus
34	chr19:37953800-37956200	Strong transcription	Brain Substantia Nigra	brain
35	chr19:37953800-37956200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr19:37953800-37957000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr19:37954000-37956200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr19:37954200-37956200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:37954400-37956200	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr19:37954400-37956200	Strong transcription	Brain Germinal Matrix	brain
41	chr19:37954400-37956200	Strong transcription	Fetal Muscle Leg	muscle
42	chr19:37954400-37956400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr19:37954400-37956400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr19:37954400-37956800	Weak transcription	Fetal Heart	heart
45	chr19:37954400-37957200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr19:37954400-37957200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr19:37954400-37957400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr19:37954400-37957400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr19:37954600-37956200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr19:37954800-37956800	Weak transcription	Rectal Smooth Muscle	rectum

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