Variant report

Variant	rs73631014
Chromosome Location	chr19:37889913-37889914
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs2081095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35676021	1.00[AMR][1000 genomes]
rs57026824	1.00[AMR][1000 genomes]
rs57558227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57991649	1.00[AMR][1000 genomes]
rs58181180	1.00[AMR][1000 genomes]
rs58356286	1.00[AMR][1000 genomes]
rs58874386	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889235	1.00[AMR][1000 genomes]
rs59974370	1.00[AMR][1000 genomes]
rs60155022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61423771	1.00[AMR][1000 genomes]
rs73617110	1.00[AMR][1000 genomes]
rs73617115	1.00[AMR][1000 genomes]
rs73617116	1.00[AMR][1000 genomes]
rs73617118	1.00[AMR][1000 genomes]
rs73617123	1.00[AMR][1000 genomes]
rs73617125	1.00[AMR][1000 genomes]
rs73617129	1.00[AMR][1000 genomes]
rs73617131	1.00[AMR][1000 genomes]
rs73617141	1.00[AMR][1000 genomes]
rs73617156	1.00[AMR][1000 genomes]
rs73617163	1.00[AMR][1000 genomes]
rs73617168	1.00[AMR][1000 genomes]
rs73617173	1.00[AMR][1000 genomes]
rs73617175	1.00[AMR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AMR][1000 genomes]
rs73618986	1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AMR][1000 genomes]
rs73621506	1.00[AMR][1000 genomes]
rs73621518	1.00[AMR][1000 genomes]
rs73621526	1.00[AMR][1000 genomes]
rs73621530	1.00[AMR][1000 genomes]
rs73622736	1.00[AMR][1000 genomes]
rs73622789	1.00[AMR][1000 genomes]
rs73622799	1.00[AMR][1000 genomes]
rs73624803	1.00[AMR][1000 genomes]
rs73624816	1.00[AMR][1000 genomes]
rs73624900	1.00[AMR][1000 genomes]
rs73627710	1.00[AMR][1000 genomes]
rs73627726	1.00[AMR][1000 genomes]
rs73627732	1.00[AMR][1000 genomes]
rs73627757	1.00[AMR][1000 genomes]
rs73627762	1.00[AMR][1000 genomes]
rs73627764	1.00[AMR][1000 genomes]
rs73627796	1.00[AMR][1000 genomes]
rs73627802	1.00[AMR][1000 genomes]
rs73629606	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629637	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629665	1.00[AMR][1000 genomes]
rs73629668	1.00[AMR][1000 genomes]
rs73629679	1.00[AMR][1000 genomes]
rs73631027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631031	1.00[AFR][1000 genomes]
rs73631041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631045	1.00[AMR][1000 genomes]
rs73631050	1.00[AMR][1000 genomes]
rs73631060	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631066	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631070	1.00[AMR][1000 genomes]
rs73631071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631080	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631082	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73631084	1.00[AMR][1000 genomes]
rs73631087	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AMR][1000 genomes]
rs73632248	1.00[AMR][1000 genomes]
rs73632252	1.00[AMR][1000 genomes]
rs73632256	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37864600-37890600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:37884600-37896800	ZNF genes & repeats	Liver	Liver
3	chr19:37887800-37896800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37889000-37891600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr19:37889800-37893200	Weak transcription	Pancreas	Pancrea

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