Variant report

Variant	rs73623432
Chromosome Location	chr19:38227031-38227032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38225257..38227730-chr19:38293878..38296712,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs57172286	1.00[AMR][1000 genomes]
rs57653286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57676507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58181180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617177	1.00[AFR][1000 genomes]
rs73617179	1.00[AMR][1000 genomes]
rs73618903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618993	1.00[AMR][1000 genomes]
rs73619001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621514	1.00[AFR][1000 genomes]
rs73621518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73630978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73630984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73630996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73630998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632220	1.00[AMR][1000 genomes]
rs73632224	1.00[AMR][1000 genomes]
rs73632231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73633136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73633141	1.00[AMR][1000 genomes]
rs73633169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38210800-38229400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:38211000-38227600	Weak transcription	Brain Hippocampus Middle	brain
3	chr19:38211000-38228400	Weak transcription	Fetal Muscle Leg	muscle
4	chr19:38211000-38228600	Weak transcription	Brain Substantia Nigra	brain
5	chr19:38211000-38229200	Weak transcription	Fetal Kidney	kidney
6	chr19:38211000-38229200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr19:38211000-38229200	Weak transcription	Left Ventricle	heart
8	chr19:38211000-38229400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr19:38211000-38229400	Weak transcription	Brain Germinal Matrix	brain
10	chr19:38211000-38229400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr19:38211000-38230200	Weak transcription	Hela-S3	cervix
12	chr19:38211200-38229200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr19:38211200-38229200	Weak transcription	Fetal Brain Female	brain
14	chr19:38211200-38229200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr19:38218400-38229200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr19:38221200-38241800	ZNF genes & repeats	Liver	Liver
17	chr19:38224000-38229400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:38224600-38241600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:38224800-38229200	Weak transcription	Fetal Lung	lung
20	chr19:38225200-38227200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
21	chr19:38225200-38232400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr19:38225200-38232400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
23	chr19:38225200-38232400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr19:38225200-38232400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr19:38225200-38232400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr19:38225200-38237200	ZNF genes & repeats	Adipose Nuclei	Adipose
27	chr19:38225400-38227200	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr19:38225400-38231600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr19:38225400-38232400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr19:38225400-38232400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr19:38225600-38227600	Strong transcription	Ovary	ovary
32	chr19:38225600-38227800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr19:38225600-38227800	Weak transcription	Pancreas	Pancrea
34	chr19:38225600-38228000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr19:38225600-38228400	Weak transcription	Fetal Stomach	stomach
36	chr19:38225600-38229200	Weak transcription	Right Ventricle	heart
37	chr19:38225800-38227800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr19:38226000-38227600	ZNF genes & repeats	Small Intestine	intestine
39	chr19:38226000-38228600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr19:38226000-38232200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr19:38226200-38227200	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr19:38226200-38232200	ZNF genes & repeats	Primary T cells from cord blood	blood
43	chr19:38226200-38232400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr19:38226400-38229200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr19:38226600-38229200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr19:38226800-38228400	Weak transcription	Colon Smooth Muscle	Colon
47	chr19:38226800-38228800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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