Variant report

Variant	rs73623827
Chromosome Location	chr6:131391239-131391240
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58237210	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280151	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61039317	1.00[AMR][1000 genomes]
rs73617128	0.84[AFR][1000 genomes]
rs73617169	0.84[AFR][1000 genomes]
rs73617178	0.84[AFR][1000 genomes]
rs73617201	0.84[AFR][1000 genomes]
rs73621548	0.84[AFR][1000 genomes]
rs73621564	1.00[AMR][1000 genomes]
rs73623310	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623396	1.00[AMR][1000 genomes]
rs73623492	1.00[AMR][1000 genomes]
rs73623501	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625103	1.00[AMR][1000 genomes]
rs73625615	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625616	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632226	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv830807	chr6:131390952-131581931	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131387200-131392800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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