Variant report

Variant	rs73632226
Chromosome Location	chr6:131186906-131186907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131184648..131186965-chr6:131190453..131192235,2	K562	blood:
2	chr6:131184620..131188311-chr6:131189838..131191757,3	K562	blood:

Variant related genes	Relation type
ENSG00000079819	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs57437525	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58237210	0.89[AFR][1000 genomes]
rs60204850	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280151	0.89[AFR][1000 genomes]
rs6901871	1.00[AMR][1000 genomes]
rs73617106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617138	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617157	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617201	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621548	0.89[AFR][1000 genomes]
rs73623310	0.89[AFR][1000 genomes]
rs73623501	0.89[AFR][1000 genomes]
rs73623827	0.80[AFR][1000 genomes]
rs73625615	0.89[AFR][1000 genomes]
rs73625616	0.89[AFR][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131190600	Weak transcription	Spleen	Spleen
4	chr6:131158200-131214400	Weak transcription	Lung	lung
5	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
6	chr6:131168400-131190600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
8	chr6:131170000-131189000	Strong transcription	Adipose Nuclei	Adipose
9	chr6:131170400-131193000	Weak transcription	Fetal Thymus	thymus
10	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
11	chr6:131170600-131187000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:131170600-131190400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:131170600-131192600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:131170600-131193000	Weak transcription	Primary T cells from cord blood	blood
15	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
16	chr6:131170800-131189000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr6:131171200-131209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
19	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
20	chr6:131172800-131189400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:131173000-131207000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:131173400-131190800	Weak transcription	Esophagus	oesophagus
23	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:131175200-131190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:131175200-131190600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:131175400-131188000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:131175400-131194200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:131175400-131203600	Weak transcription	A549	lung
30	chr6:131175400-131211200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:131175600-131188200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:131175600-131190400	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:131175600-131190600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:131175600-131205400	Weak transcription	NH-A	brain
35	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:131176200-131190800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:131176800-131188400	Strong transcription	Fetal Lung	lung
38	chr6:131177200-131209200	Weak transcription	HUVEC	blood vessel
39	chr6:131179200-131214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:131179600-131210600	Weak transcription	NHEK	skin
42	chr6:131179600-131215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:131180000-131203200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:131180800-131191600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:131181200-131188800	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:131181400-131193800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:131181400-131214400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:131181800-131188200	Strong transcription	Ovary	ovary
49	chr6:131181800-131188600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:131182000-131188800	Strong transcription	Placenta	Placenta

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