Variant report

Variant	rs57437525
Chromosome Location	chr6:131245664-131245665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131245188..131247804-chr6:131249935..131252148,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58237210	0.86[AFR][1000 genomes]
rs60204850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280151	0.86[AFR][1000 genomes]
rs6901871	1.00[AMR][1000 genomes]
rs73617106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617111	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617128	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617157	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623310	0.86[AFR][1000 genomes]
rs73623501	0.86[AFR][1000 genomes]
rs73625615	0.86[AFR][1000 genomes]
rs73625616	0.86[AFR][1000 genomes]
rs73632226	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
7	chr6:131229600-131249600	Weak transcription	Osteobl	bone
8	chr6:131234000-131250200	Weak transcription	Ovary	ovary
9	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
10	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
13	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
17	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
21	chr6:131239200-131252600	Weak transcription	Dnd41	blood
22	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:131242200-131249600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:131242400-131247600	Strong transcription	HepG2	liver
25	chr6:131242600-131254800	Weak transcription	Fetal Kidney	kidney
26	chr6:131242800-131247200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:131242800-131255000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:131244000-131248000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:131244200-131246200	Strong transcription	Fetal Lung	lung
30	chr6:131244200-131249400	Weak transcription	NHDF-Ad	bronchial
31	chr6:131244200-131250000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:131244200-131279000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:131244600-131246800	Weak transcription	Brain Anterior Caudate	brain
34	chr6:131244800-131249800	Weak transcription	HSMMtube	muscle
35	chr6:131244800-131255000	Weak transcription	Lung	lung
36	chr6:131245000-131246200	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:131245000-131246800	Weak transcription	Brain Substantia Nigra	brain
38	chr6:131245000-131247600	Strong transcription	HSMM	muscle
39	chr6:131245000-131248600	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:131245000-131248600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:131245000-131249400	Weak transcription	Small Intestine	intestine
42	chr6:131245000-131249600	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:131245000-131254000	Weak transcription	Left Ventricle	heart
44	chr6:131245000-131254800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:131245200-131247600	Strong transcription	Adipose Nuclei	Adipose
46	chr6:131245400-131246000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:131245400-131247000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:131245400-131247600	Strong transcription	NHLF	lung
49	chr6:131245400-131248200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:131245400-131248600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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