Variant report

Variant	rs73617106
Chromosome Location	chr6:131211822-131211823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:131211662-131212174	IMR90	lung:	n/a	n/a
2	MEF2A	chr6:131211513-131211855	GM12878	blood:	n/a	chr6:131211672-131211687
3	RCOR1	chr6:131211363-131212540	IMR90	lung:	n/a	n/a
4	NFIC	chr6:131211484-131211956	GM12878	blood:	n/a	n/a
5	MAFK	chr6:131211686-131212161	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
EPB41L2	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57437525	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58237210	0.86[AFR][1000 genomes]
rs60204850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60280151	0.86[AFR][1000 genomes]
rs6901871	1.00[AMR][1000 genomes]
rs73617111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617128	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617157	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621548	0.93[AFR][1000 genomes]
rs73623310	0.86[AFR][1000 genomes]
rs73623501	0.86[AFR][1000 genomes]
rs73625615	0.86[AFR][1000 genomes]
rs73625616	0.86[AFR][1000 genomes]
rs73632226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131149400-131213200	Weak transcription	Pancreas	Pancrea
2	chr6:131151600-131216600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:131158200-131214400	Weak transcription	Lung	lung
4	chr6:131159000-131229000	Weak transcription	Colonic Mucosa	Colon
5	chr6:131168800-131214600	Weak transcription	Fetal Kidney	kidney
6	chr6:131170400-131217400	Weak transcription	Psoas Muscle	Psoas
7	chr6:131170600-131213800	Weak transcription	GM12878-XiMat	blood
8	chr6:131171200-131223200	Weak transcription	Right Ventricle	heart
9	chr6:131171400-131220200	Weak transcription	Fetal Brain Male	brain
10	chr6:131175000-131222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:131175200-131214000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:131175600-131221600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:131179200-131214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:131179400-131222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:131179600-131215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:131181400-131214400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:131185800-131214400	Weak transcription	Thymus	Thymus
18	chr6:131187000-131214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:131187000-131223200	Weak transcription	Gastric	stomach
20	chr6:131187200-131216400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:131188200-131216400	Weak transcription	HSMMtube	muscle
22	chr6:131190400-131227000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:131190800-131224200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:131191000-131234400	Weak transcription	Esophagus	oesophagus
25	chr6:131191200-131224200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:131191200-131233000	Weak transcription	Spleen	Spleen
27	chr6:131191600-131214600	Weak transcription	Fetal Intestine Small	intestine
28	chr6:131194200-131222000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:131195800-131224200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:131198600-131224200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:131201000-131222400	Strong transcription	Dnd41	blood
32	chr6:131201800-131214400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:131201800-131222000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:131203600-131234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:131203800-131214400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:131204200-131213200	Weak transcription	Ovary	ovary
37	chr6:131204200-131213800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:131204400-131214400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:131204400-131214800	Weak transcription	Placenta	Placenta
40	chr6:131204400-131228600	Weak transcription	Stomach Mucosa	stomach
41	chr6:131204600-131213200	Weak transcription	Aorta	Aorta
42	chr6:131204600-131213200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:131205200-131222000	Weak transcription	A549	lung
44	chr6:131205400-131213200	Weak transcription	Fetal Stomach	stomach
45	chr6:131205400-131214200	Weak transcription	Left Ventricle	heart
46	chr6:131206400-131212800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:131207600-131212800	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:131208000-131222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:131209000-131234000	Weak transcription	Fetal Thymus	thymus
50	chr6:131209200-131214000	Weak transcription	Brain Inferior Temporal Lobe	brain

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