Variant report

Variant	rs73625616
Chromosome Location	chr6:131375384-131375385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131370012..131372653-chr6:131373371..131376105,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs57437525	0.86[AFR][1000 genomes]
rs58237210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60204850	0.86[AFR][1000 genomes]
rs60280151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61039317	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617106	0.86[AFR][1000 genomes]
rs73617111	0.86[AFR][1000 genomes]
rs73617128	0.93[AFR][1000 genomes]
rs73617138	0.84[AFR][1000 genomes]
rs73617157	0.86[AFR][1000 genomes]
rs73617169	0.93[AFR][1000 genomes]
rs73617178	0.93[AFR][1000 genomes]
rs73617201	0.93[AFR][1000 genomes]
rs73621548	0.93[AFR][1000 genomes]
rs73621564	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623396	1.00[AMR][1000 genomes]
rs73623492	1.00[AMR][1000 genomes]
rs73623501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623827	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625103	1.00[AMR][1000 genomes]
rs73625615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632226	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3391837	chr6:131374715-131375870	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131373400-131381400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:131373600-131376800	ZNF genes & repeats	NHEK	skin
3	chr6:131373800-131377400	ZNF genes & repeats	Fetal Muscle Leg	muscle
4	chr6:131374000-131377600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:131374200-131376400	ZNF genes & repeats	Fetal Stomach	stomach
6	chr6:131374400-131378200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:131374600-131375400	ZNF genes & repeats	Left Ventricle	heart
8	chr6:131374600-131375400	ZNF genes & repeats	NHDF-Ad	bronchial
9	chr6:131374600-131375800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:131374600-131376000	ZNF genes & repeats	HUVEC	blood vessel
11	chr6:131374600-131376400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
12	chr6:131374600-131376400	ZNF genes & repeats	Brain Hippocampus Middle	brain
13	chr6:131374600-131376400	ZNF genes & repeats	Fetal Lung	lung
14	chr6:131374600-131376600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:131374600-131376600	ZNF genes & repeats	Brain Anterior Caudate	brain
16	chr6:131374600-131376800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
17	chr6:131374600-131376800	ZNF genes & repeats	NHLF	lung
18	chr6:131374600-131377000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:131374600-131377200	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr6:131374600-131377400	ZNF genes & repeats	Fetal Intestine Large	intestine
21	chr6:131374600-131378000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:131374600-131378000	ZNF genes & repeats	A549	lung
23	chr6:131374800-131375400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
24	chr6:131374800-131375400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
25	chr6:131374800-131375600	ZNF genes & repeats	Ovary	ovary
26	chr6:131374800-131375800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:131374800-131375800	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr6:131374800-131376000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
29	chr6:131374800-131376200	ZNF genes & repeats	Osteobl	bone
30	chr6:131374800-131376400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:131374800-131376400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:131374800-131376600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:131374800-131376600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr6:131374800-131377000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr6:131374800-131377200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr6:131374800-131377200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
37	chr6:131374800-131377600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr6:131374800-131378000	ZNF genes & repeats	Dnd41	blood
39	chr6:131374800-131378000	ZNF genes & repeats	HepG2	liver
40	chr6:131374800-131378800	ZNF genes & repeats	Primary B cells from cord blood	blood
41	chr6:131375000-131375400	Enhancers	Hela-S3	cervix
42	chr6:131375000-131375600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:131375000-131375600	ZNF genes & repeats	Colon Smooth Muscle	Colon
44	chr6:131375000-131375600	ZNF genes & repeats	Thymus	Thymus
45	chr6:131375000-131375800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:131375000-131376000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr6:131375000-131376000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:131375000-131376200	ZNF genes & repeats	Liver	Liver
49	chr6:131375000-131376200	ZNF genes & repeats	Fetal Kidney	kidney
50	chr6:131375000-131376400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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