Variant report

Variant	rs73625615
Chromosome Location	chr6:131373681-131373682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131370012..131372653-chr6:131373371..131376105,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs57437525	0.86[AFR][1000 genomes]
rs58237210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60204850	0.86[AFR][1000 genomes]
rs60280151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61039317	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73617106	0.86[AFR][1000 genomes]
rs73617111	0.86[AFR][1000 genomes]
rs73617128	0.93[AFR][1000 genomes]
rs73617138	0.84[AFR][1000 genomes]
rs73617157	0.86[AFR][1000 genomes]
rs73617169	0.93[AFR][1000 genomes]
rs73617178	0.93[AFR][1000 genomes]
rs73617201	0.93[AFR][1000 genomes]
rs73621548	0.93[AFR][1000 genomes]
rs73621564	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623396	1.00[AMR][1000 genomes]
rs73623492	1.00[AMR][1000 genomes]
rs73623501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73623827	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73625103	1.00[AMR][1000 genomes]
rs73625616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73632226	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131346000-131375000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:131351400-131375000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:131351600-131374600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:131352400-131374400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:131356600-131375000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:131359000-131374800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:131360800-131374800	Weak transcription	HSMM	muscle
8	chr6:131360800-131375000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:131361400-131373800	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:131364400-131374600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:131367800-131374600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:131368200-131374800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:131368200-131375200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:131370400-131374600	Weak transcription	Brain Anterior Caudate	brain
15	chr6:131370600-131374600	Weak transcription	A549	lung
16	chr6:131371000-131374600	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:131371000-131375000	Weak transcription	Brain Substantia Nigra	brain
18	chr6:131371200-131374200	Weak transcription	Fetal Stomach	stomach
19	chr6:131371200-131374600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:131371200-131374800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:131371200-131374800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:131371800-131375000	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:131372200-131374000	Enhancers	NHLF	lung
24	chr6:131372200-131374600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:131372200-131375000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:131372400-131374600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:131372400-131374600	Weak transcription	HUVEC	blood vessel
28	chr6:131372600-131374000	Enhancers	HepG2	liver
29	chr6:131372600-131374800	Weak transcription	Adipose Nuclei	Adipose
30	chr6:131372600-131374800	Weak transcription	Osteobl	bone
31	chr6:131372800-131374600	Weak transcription	NHDF-Ad	bronchial
32	chr6:131373000-131374400	Weak transcription	HMEC	breast
33	chr6:131373400-131374000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:131373400-131374800	Weak transcription	Ovary	ovary
35	chr6:131373400-131381400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:131373600-131374200	ZNF genes & repeats	Fetal Lung	lung
37	chr6:131373600-131376800	ZNF genes & repeats	NHEK	skin

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