Variant report

Variant	rs73629987
Chromosome Location	chr19:57046347-57046348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs57355484	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58021248	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58464193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59624311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59653857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60067324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60601332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60745037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60755043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61159046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73616007	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73616009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73616014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73616015	1.00[AMR][1000 genomes]
rs73628501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629909	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73629985	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
5	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv580385	chr19:56918598-57072433	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv1057240	chr19:56919831-57153659	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv544097	chr19:56919831-57153659	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv580386	chr19:56924761-57072433	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv1055357	chr19:56933632-57190007	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	nsv912518	chr19:56995737-57109821	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv912519	chr19:57020754-57065189	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:57022800-57049200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:57025600-57049200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:57042000-57049000	Weak transcription	Fetal Heart	heart
4	chr19:57044400-57046800	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr19:57045600-57047400	Weak transcription	Brain Substantia Nigra	brain
6	chr19:57045600-57048400	Weak transcription	Pancreas	Pancrea
7	chr19:57045800-57048400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr19:57046200-57049200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links