Variant report

Variant	rs73655173
Chromosome Location	chr9:100523852-100523853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100510873..100512697-chr9:100522952..100525566,2	MCF-7	breast:
2	chr9:100519613..100522363-chr9:100523340..100525819,2	K562	blood:
3	chr9:100501560..100504087-chr9:100522833..100525239,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1126122	0.81[AFR][1000 genomes]
rs3176627	0.81[AFR][1000 genomes]
rs3176677	0.81[AFR][1000 genomes]
rs3176692	0.81[AFR][1000 genomes]
rs3176695	0.81[AFR][1000 genomes]
rs3176717	0.81[AFR][1000 genomes]
rs3176728	0.81[AFR][1000 genomes]
rs3176734	0.81[AFR][1000 genomes]
rs3176752	0.81[AFR][1000 genomes]
rs3176758	0.81[AFR][1000 genomes]
rs35251482	0.81[AFR][1000 genomes]
rs55900941	0.81[AFR][1000 genomes]
rs56023926	0.81[AFR][1000 genomes]
rs56213410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56412432	0.81[AFR][1000 genomes]
rs57246563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57519506	1.00[AFR][1000 genomes]
rs57940370	0.81[AFR][1000 genomes]
rs58272409	0.81[AFR][1000 genomes]
rs59249377	1.00[AMR][1000 genomes]
rs59782843	0.81[AFR][1000 genomes]
rs59945109	0.81[AFR][1000 genomes]
rs60353451	0.81[AFR][1000 genomes]
rs60359353	0.81[AFR][1000 genomes]
rs60705728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61010519	0.81[AFR][1000 genomes]
rs61152667	0.81[AFR][1000 genomes]
rs73498320	0.81[AFR][1000 genomes]
rs73498331	0.81[AFR][1000 genomes]
rs73498342	0.81[AFR][1000 genomes]
rs73498350	0.81[AFR][1000 genomes]
rs73498374	0.81[AFR][1000 genomes]
rs73498394	0.81[AFR][1000 genomes]
rs73498399	0.81[AFR][1000 genomes]
rs73498401	0.81[AFR][1000 genomes]
rs73500372	0.81[AFR][1000 genomes]
rs73502218	0.81[AFR][1000 genomes]
rs73551083	0.81[AFR][1000 genomes]
rs73554626	0.81[AFR][1000 genomes]
rs73554629	0.81[AFR][1000 genomes]
rs73554645	0.81[AFR][1000 genomes]
rs73554654	0.81[AFR][1000 genomes]
rs73655154	0.81[AFR][1000 genomes]
rs73655163	0.93[AFR][1000 genomes]
rs73655166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv972793	chr9:100521630-100525389	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100515200-100524200	Weak transcription	Esophagus	oesophagus
2	chr9:100521000-100524600	Enhancers	Adipose Nuclei	Adipose
3	chr9:100521400-100524000	Enhancers	Liver	Liver
4	chr9:100522400-100526200	Weak transcription	Right Atrium	heart
5	chr9:100523200-100524000	Flanking Active TSS	HepG2	liver
6	chr9:100523600-100524000	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
7	chr9:100523600-100524000	Flanking Active TSS	Fetal Intestine Large	intestine
8	chr9:100523600-100524000	Flanking Active TSS	Fetal Intestine Small	intestine
9	chr9:100523600-100527800	Weak transcription	Hela-S3	cervix
10	chr9:100523800-100524000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links