Variant report

Variant	rs73502218
Chromosome Location	chr9:100468566-100468567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100462976..100466831-chr9:100467484..100471759,4	K562	blood:
2	chr9:100466474..100468807-chr9:100682892..100684747,2	MCF-7	breast:
3	chr9:100459177..100461858-chr9:100468270..100470347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214417	Chromatin interaction
ENSG00000136936	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10982836	0.94[AFR][1000 genomes]
rs1126122	1.00[AFR][1000 genomes]
rs3176627	1.00[AFR][1000 genomes]
rs3176677	1.00[AFR][1000 genomes]
rs3176692	1.00[AFR][1000 genomes]
rs3176695	1.00[AFR][1000 genomes]
rs3176717	1.00[AFR][1000 genomes]
rs3176728	1.00[AFR][1000 genomes]
rs3176752	1.00[AFR][1000 genomes]
rs3176758	1.00[AFR][1000 genomes]
rs35251482	1.00[AFR][1000 genomes]
rs3824494	0.94[AFR][1000 genomes]
rs55900941	1.00[AFR][1000 genomes]
rs56023926	1.00[AFR][1000 genomes]
rs56164437	0.89[AFR][1000 genomes]
rs56213410	0.81[AFR][1000 genomes]
rs56412432	1.00[AFR][1000 genomes]
rs57246563	0.81[AFR][1000 genomes]
rs57519506	0.81[AFR][1000 genomes]
rs57612395	0.89[AFR][1000 genomes]
rs57666011	0.89[AFR][1000 genomes]
rs57940370	1.00[AFR][1000 genomes]
rs58272409	1.00[AFR][1000 genomes]
rs59782843	1.00[AFR][1000 genomes]
rs59945109	1.00[AFR][1000 genomes]
rs60197625	0.94[AFR][1000 genomes]
rs60353451	1.00[AFR][1000 genomes]
rs60359353	1.00[AFR][1000 genomes]
rs60779859	0.89[AFR][1000 genomes]
rs61010519	1.00[AFR][1000 genomes]
rs61152667	1.00[AFR][1000 genomes]
rs73484437	0.89[AFR][1000 genomes]
rs73484439	0.89[AFR][1000 genomes]
rs73498320	1.00[AFR][1000 genomes]
rs73498331	1.00[AFR][1000 genomes]
rs73498342	1.00[AFR][1000 genomes]
rs73498350	1.00[AFR][1000 genomes]
rs73498374	1.00[AFR][1000 genomes]
rs73498394	1.00[AFR][1000 genomes]
rs73498399	1.00[AFR][1000 genomes]
rs73498401	1.00[AFR][1000 genomes]
rs73500372	1.00[AFR][1000 genomes]
rs73502207	0.94[AFR][1000 genomes]
rs73551083	1.00[AFR][1000 genomes]
rs73552526	0.94[AFR][1000 genomes]
rs73554626	1.00[AFR][1000 genomes]
rs73554629	1.00[AFR][1000 genomes]
rs73554645	1.00[AFR][1000 genomes]
rs73554654	1.00[AFR][1000 genomes]
rs73655154	1.00[AFR][1000 genomes]
rs73655166	0.81[AFR][1000 genomes]
rs73655167	0.81[AFR][1000 genomes]
rs73655168	0.81[AFR][1000 genomes]
rs73655169	0.81[AFR][1000 genomes]
rs73655171	0.81[AFR][1000 genomes]
rs73655173	0.81[AFR][1000 genomes]
rs73655174	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100462400-100472800	Weak transcription	Brain Substantia Nigra	brain
2	chr9:100465400-100469000	Enhancers	HMEC	breast
3	chr9:100465600-100468600	Enhancers	HUVEC	blood vessel
4	chr9:100465600-100468800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:100465600-100468800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:100466600-100468600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:100466800-100468800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:100466800-100472800	Weak transcription	K562	blood
9	chr9:100467000-100468600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr9:100467000-100468600	Enhancers	NHEK	skin
11	chr9:100467000-100468800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:100467200-100472800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:100467200-100476400	Weak transcription	Fetal Intestine Large	intestine
14	chr9:100467600-100468600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr9:100467600-100469000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr9:100467800-100468600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:100468000-100468600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr9:100468000-100472600	Weak transcription	Hela-S3	cervix
19	chr9:100468000-100476600	Weak transcription	GM12878-XiMat	blood
20	chr9:100468400-100468600	Bivalent Enhancer	Osteobl	bone

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