Variant report

Variant	rs60779859
Chromosome Location	chr9:100486757-100486758
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100480674..100483581-chr9:100484932..100487285,2	K562	blood:
2	chr9:100483705..100485989-chr9:100486600..100490449,4	K562	blood:
3	chr9:100478863..100481337-chr9:100486347..100488581,2	MCF-7	breast:
4	chr9:100485962..100487787-chr9:100745027..100747172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10982836	0.83[AFR][1000 genomes]
rs1126122	0.89[AFR][1000 genomes]
rs3176627	0.89[AFR][1000 genomes]
rs3176677	0.89[AFR][1000 genomes]
rs3176692	0.89[AFR][1000 genomes]
rs3176695	0.89[AFR][1000 genomes]
rs3176717	0.89[AFR][1000 genomes]
rs3176728	0.89[AFR][1000 genomes]
rs3176752	0.89[AFR][1000 genomes]
rs3176758	0.89[AFR][1000 genomes]
rs35251482	0.89[AFR][1000 genomes]
rs3824494	0.94[AFR][1000 genomes]
rs55900941	0.89[AFR][1000 genomes]
rs56023926	0.89[AFR][1000 genomes]
rs56164437	0.89[AFR][1000 genomes]
rs56412432	0.89[AFR][1000 genomes]
rs57612395	1.00[AFR][1000 genomes]
rs57940370	0.89[AFR][1000 genomes]
rs58272409	0.89[AFR][1000 genomes]
rs59782843	0.89[AFR][1000 genomes]
rs59945109	0.89[AFR][1000 genomes]
rs60197625	0.94[AFR][1000 genomes]
rs60353451	0.89[AFR][1000 genomes]
rs60359353	0.89[AFR][1000 genomes]
rs61010519	0.89[AFR][1000 genomes]
rs61152667	0.89[AFR][1000 genomes]
rs73484437	1.00[AFR][1000 genomes]
rs73484439	1.00[AFR][1000 genomes]
rs73498320	0.89[AFR][1000 genomes]
rs73498331	0.89[AFR][1000 genomes]
rs73498342	0.89[AFR][1000 genomes]
rs73498350	0.89[AFR][1000 genomes]
rs73498374	0.89[AFR][1000 genomes]
rs73498394	0.89[AFR][1000 genomes]
rs73498399	0.89[AFR][1000 genomes]
rs73498401	0.89[AFR][1000 genomes]
rs73500372	0.89[AFR][1000 genomes]
rs73502207	0.83[AFR][1000 genomes]
rs73502218	0.89[AFR][1000 genomes]
rs73551083	0.89[AFR][1000 genomes]
rs73552526	0.94[AFR][1000 genomes]
rs73554626	0.89[AFR][1000 genomes]
rs73554629	0.89[AFR][1000 genomes]
rs73554645	0.89[AFR][1000 genomes]
rs73554654	0.89[AFR][1000 genomes]
rs73655154	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100486200-100486800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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