Variant report

Variant	rs73498320
Chromosome Location	chr9:100400566-100400567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100399300..100401975-chr9:100415730..100418354,2	MCF-7	breast:
2	chr9:100399646..100402826-chr9:100413871..100416046,3	MCF-7	breast:
3	chr9:100399503..100403011-chr9:100457323..100460203,3	MCF-7	breast:
4	chr9:100399210..100401168-chr9:100434676..100437354,2	K562	blood:
5	chr9:100399371..100401119-chr9:100416169..100418292,2	MCF-7	breast:
6	chr9:100399929..100403095-chr9:100406976..100411224,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136936	Chromatin interaction
ENSG00000136937	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10982836	0.94[AFR][1000 genomes]
rs1126122	1.00[AFR][1000 genomes]
rs3176627	1.00[AFR][1000 genomes]
rs3176677	1.00[AFR][1000 genomes]
rs3176692	1.00[AFR][1000 genomes]
rs3176695	1.00[AFR][1000 genomes]
rs3176717	1.00[AFR][1000 genomes]
rs3176728	1.00[AFR][1000 genomes]
rs3176752	1.00[AFR][1000 genomes]
rs3176758	1.00[AFR][1000 genomes]
rs35251482	1.00[AFR][1000 genomes]
rs3824494	0.94[AFR][1000 genomes]
rs55900941	1.00[AFR][1000 genomes]
rs56023926	1.00[AFR][1000 genomes]
rs56164437	0.89[AFR][1000 genomes]
rs56213410	0.81[AFR][1000 genomes]
rs56412432	1.00[AFR][1000 genomes]
rs57246563	0.81[AFR][1000 genomes]
rs57519506	0.81[AFR][1000 genomes]
rs57612395	0.89[AFR][1000 genomes]
rs57666011	0.89[AFR][1000 genomes]
rs57940370	1.00[AFR][1000 genomes]
rs58272409	1.00[AFR][1000 genomes]
rs59782843	1.00[AFR][1000 genomes]
rs59945109	1.00[AFR][1000 genomes]
rs60197625	0.94[AFR][1000 genomes]
rs60353451	1.00[AFR][1000 genomes]
rs60359353	1.00[AFR][1000 genomes]
rs60779859	0.89[AFR][1000 genomes]
rs61010519	1.00[AFR][1000 genomes]
rs61152667	1.00[AFR][1000 genomes]
rs73484437	0.89[AFR][1000 genomes]
rs73484439	0.89[AFR][1000 genomes]
rs73498331	1.00[AFR][1000 genomes]
rs73498342	1.00[AFR][1000 genomes]
rs73498350	1.00[AFR][1000 genomes]
rs73498374	1.00[AFR][1000 genomes]
rs73498394	1.00[AFR][1000 genomes]
rs73498399	1.00[AFR][1000 genomes]
rs73498401	1.00[AFR][1000 genomes]
rs73500372	1.00[AFR][1000 genomes]
rs73502207	0.94[AFR][1000 genomes]
rs73502218	1.00[AFR][1000 genomes]
rs73551083	1.00[AFR][1000 genomes]
rs73552526	0.94[AFR][1000 genomes]
rs73554626	1.00[AFR][1000 genomes]
rs73554629	1.00[AFR][1000 genomes]
rs73554645	1.00[AFR][1000 genomes]
rs73554654	1.00[AFR][1000 genomes]
rs73655154	1.00[AFR][1000 genomes]
rs73655166	0.81[AFR][1000 genomes]
rs73655167	0.81[AFR][1000 genomes]
rs73655168	0.81[AFR][1000 genomes]
rs73655169	0.81[AFR][1000 genomes]
rs73655171	0.81[AFR][1000 genomes]
rs73655173	0.81[AFR][1000 genomes]
rs73655174	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100396800-100400600	Weak transcription	Gastric	stomach
2	chr9:100396800-100410200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:100397000-100403000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:100397000-100405800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:100397000-100409200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:100397000-100410200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:100397000-100410200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:100397000-100411000	Weak transcription	Esophagus	oesophagus
9	chr9:100397200-100405600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:100397400-100401600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:100397400-100401800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr9:100397400-100402000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:100397400-100403000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr9:100397600-100400800	Enhancers	Primary T cells from cord blood	blood
15	chr9:100397600-100401200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:100397600-100401600	Enhancers	Liver	Liver
17	chr9:100397600-100402000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr9:100397600-100403000	Weak transcription	Placenta	Placenta
19	chr9:100397600-100403800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:100397600-100405000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:100397600-100405400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:100397600-100405400	Weak transcription	Fetal Kidney	kidney
23	chr9:100397600-100409800	Weak transcription	Colonic Mucosa	Colon
24	chr9:100397800-100401000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:100397800-100405800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr9:100398000-100400600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:100398000-100403200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:100398000-100410200	Weak transcription	Lung	lung
29	chr9:100398000-100418600	Weak transcription	Pancreas	Pancrea
30	chr9:100398400-100400600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:100398400-100400600	Genic enhancers	HSMM	muscle
32	chr9:100398400-100401800	Enhancers	A549	lung
33	chr9:100398400-100402400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr9:100398400-100402600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:100398400-100402600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr9:100398400-100402600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:100398400-100402600	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:100398400-100402800	Weak transcription	Fetal Thymus	thymus
39	chr9:100398400-100402800	Enhancers	HepG2	liver
40	chr9:100398400-100403000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr9:100398400-100403200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr9:100398400-100403400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:100398400-100403400	Weak transcription	HMEC	breast
44	chr9:100398400-100403800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:100398400-100403800	Weak transcription	Fetal Intestine Large	intestine
46	chr9:100398400-100404400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:100398400-100405400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr9:100398400-100405600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr9:100398400-100410200	Weak transcription	Fetal Intestine Small	intestine
50	chr9:100398400-100410200	Weak transcription	Fetal Stomach	stomach

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