Variant report

Variant	rs73753350
Chromosome Location	chr6:73260335-73260336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1112877	1.00[AMR][1000 genomes]
rs16882541	1.00[AMR][1000 genomes]
rs16882560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4088773	1.00[AMR][1000 genomes]
rs55817542	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55885580	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59119615	0.86[AFR][1000 genomes]
rs59508897	0.97[AFR][1000 genomes]
rs60830036	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61530646	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6453590	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6907438	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6917358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929554	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751722	1.00[AMR][1000 genomes]
rs73751723	1.00[AMR][1000 genomes]
rs73751728	1.00[AMR][1000 genomes]
rs73751730	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751732	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751734	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753349	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753353	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753355	0.86[AFR][1000 genomes]
rs73753363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754398	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757187	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7757848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773525	1.00[AMR][1000 genomes]
rs7774395	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73252200-73262200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73257000-73264800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:73259000-73263400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:73260000-73262800	Enhancers	Muscle Satellite Cultured Cells	--

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