Variant report

Variant	rs16882541
Chromosome Location	chr6:73243404-73243405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73241866..73243556-chr6:73257472..73259393,2	K562	blood:
2	chr6:73242981..73244907-chr6:73253743..73256679,2	MCF-7	breast:
3	chr6:73235202..73238182-chr6:73242256..73244543,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1112877	0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882626	1.00[EUR][1000 genomes]
rs16882652	1.00[EUR][1000 genomes]
rs4088773	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676608	1.00[EUR][1000 genomes]
rs55817542	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55885580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173098	1.00[EUR][1000 genomes]
rs58136138	1.00[EUR][1000 genomes]
rs59070352	1.00[EUR][1000 genomes]
rs59119615	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59508897	1.00[EUR][1000 genomes]
rs60830036	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60941898	1.00[EUR][1000 genomes]
rs61530646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6453590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907438	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751720	1.00[EUR][1000 genomes]
rs73751722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751728	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751730	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751731	1.00[EUR][1000 genomes]
rs73751732	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751734	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753350	1.00[AMR][1000 genomes]
rs73753351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753355	1.00[EUR][1000 genomes]
rs73753357	1.00[EUR][1000 genomes]
rs73753358	1.00[EUR][1000 genomes]
rs73753363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73754703	1.00[EUR][1000 genomes]
rs7754398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768673	1.00[JPT][hapmap]
rs7773525	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774395	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73240600-73250600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73241800-73244200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:73242200-73244400	Enhancers	Osteobl	bone
4	chr6:73242200-73244600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:73242400-73243600	Enhancers	HSMM	muscle
6	chr6:73242600-73243600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:73243000-73243600	Enhancers	A549	lung
8	chr6:73243000-73244200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:73243000-73245200	Enhancers	K562	blood

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