Variant report

Variant	rs73753358
Chromosome Location	chr6:73268093-73268094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1112877	1.00[EUR][1000 genomes]
rs16882541	1.00[EUR][1000 genomes]
rs16882560	1.00[EUR][1000 genomes]
rs16882626	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882652	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4088773	1.00[EUR][1000 genomes]
rs55676608	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55817542	1.00[EUR][1000 genomes]
rs55885580	1.00[EUR][1000 genomes]
rs56173098	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58136138	1.00[EUR][1000 genomes]
rs59070352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59119615	1.00[EUR][1000 genomes]
rs59508897	1.00[EUR][1000 genomes]
rs60830036	1.00[EUR][1000 genomes]
rs60941898	1.00[EUR][1000 genomes]
rs61530646	1.00[EUR][1000 genomes]
rs6453590	1.00[EUR][1000 genomes]
rs6907438	1.00[EUR][1000 genomes]
rs6917358	1.00[EUR][1000 genomes]
rs6929554	1.00[EUR][1000 genomes]
rs6931019	1.00[EUR][1000 genomes]
rs73751720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751722	1.00[EUR][1000 genomes]
rs73751723	1.00[EUR][1000 genomes]
rs73751728	1.00[EUR][1000 genomes]
rs73751730	1.00[EUR][1000 genomes]
rs73751731	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751732	1.00[EUR][1000 genomes]
rs73751734	1.00[EUR][1000 genomes]
rs73753349	1.00[EUR][1000 genomes]
rs73753351	1.00[EUR][1000 genomes]
rs73753353	1.00[EUR][1000 genomes]
rs73753354	1.00[EUR][1000 genomes]
rs73753355	1.00[EUR][1000 genomes]
rs73753357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753363	1.00[EUR][1000 genomes]
rs73754703	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754398	1.00[EUR][1000 genomes]
rs7757187	1.00[EUR][1000 genomes]
rs7757848	1.00[EUR][1000 genomes]
rs7773525	1.00[EUR][1000 genomes]
rs7774395	1.00[EUR][1000 genomes]
rs9446671	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73263800-73271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:73265000-73270400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:73265000-73270600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:73265200-73268400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:73265200-73269000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:73265200-73270400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:73265400-73268200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:73265600-73269000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:73265600-73270600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:73265600-73270800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:73265800-73268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:73265800-73268800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:73265800-73269000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:73266000-73268200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:73266000-73268400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:73266200-73270600	Weak transcription	Osteobl	bone
17	chr6:73266400-73269400	Weak transcription	NHEK	skin
18	chr6:73266600-73270000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:73266600-73270000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:73268000-73268200	Active TSS	K562	blood

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