Variant report

Variant	rs6929554
Chromosome Location	chr6:73263598-73263599
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73256563..73258779-chr6:73261159..73263806,2	K562	blood:
2	chr6:73127401..73129885-chr6:73262946..73264619,2	K562	blood:
3	chr6:73239217..73240861-chr6:73262225..73264019,2	K562	blood:
4	chr6:73262215..73264630-chr6:73332275..73334908,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1112877	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882626	1.00[EUR][1000 genomes]
rs16882652	1.00[EUR][1000 genomes]
rs4088773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676608	1.00[EUR][1000 genomes]
rs55817542	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55885580	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173098	1.00[EUR][1000 genomes]
rs58136138	1.00[EUR][1000 genomes]
rs59070352	1.00[EUR][1000 genomes]
rs59119615	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59508897	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60830036	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60941898	1.00[EUR][1000 genomes]
rs61530646	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6453590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931019	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751720	1.00[EUR][1000 genomes]
rs73751722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751730	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751731	1.00[EUR][1000 genomes]
rs73751732	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751734	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753349	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753351	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753355	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73753357	1.00[EUR][1000 genomes]
rs73753358	1.00[EUR][1000 genomes]
rs73753363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73754703	1.00[EUR][1000 genomes]
rs7754398	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757187	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773525	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774395	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73257000-73264800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:73261000-73265200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:73261000-73266000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:73261200-73265800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:73262200-73266000	Enhancers	HSMM	muscle
6	chr6:73262200-73266200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73262400-73264600	Weak transcription	Pancreas	Pancrea
8	chr6:73262400-73265800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:73262600-73263600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:73262600-73263600	Enhancers	NHLF	lung
11	chr6:73262600-73263800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:73262600-73263800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:73262600-73263800	Flanking Active TSS	K562	blood
14	chr6:73262600-73264800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:73262600-73265000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:73262600-73265200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:73262600-73265200	Enhancers	NHDF-Ad	bronchial
18	chr6:73262600-73265800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:73262600-73266000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:73262600-73266600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:73262800-73263800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr6:73262800-73264200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:73263000-73263600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:73263000-73263800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:73263000-73264000	Active TSS	A549	lung
26	chr6:73263000-73264600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:73263000-73264800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:73263000-73265000	Flanking Active TSS	NH-A	brain
29	chr6:73263400-73263600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:73263400-73263800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:73263400-73263800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr6:73263400-73263800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:73263400-73263800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:73263400-73263800	Enhancers	Colon Smooth Muscle	Colon
35	chr6:73263400-73264000	Flanking Active TSS	HMEC	breast
36	chr6:73263400-73264000	Flanking Active TSS	HSMMtube	muscle
37	chr6:73263400-73264000	Flanking Active TSS	Osteobl	bone
38	chr6:73263400-73264200	Enhancers	Fetal Brain Female	brain
39	chr6:73263400-73264600	Flanking Active TSS	NHEK	skin
40	chr6:73263400-73265400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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