Variant report

Variant	rs55885580
Chromosome Location	chr6:73289839-73289840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73268900..73271716-chr6:73288163..73291530,3	K562	blood:
2	chr6:73269291..73270899-chr6:73288717..73290392,2	K562	blood:
3	chr6:73121627..73122548-chr6:73289674..73290658,7	MCF-7	breast:
4	chr6:73231768..73233090-chr6:73289801..73290784,5	MCF-7	breast:
5	chr6:73232156..73233095-chr6:73289786..73290377,3	MCF-7	breast:
6	chr6:73121603..73122560-chr6:73289749..73290721,9	MCF-7	breast:
7	chr6:73121592..73123278-chr6:73288779..73290697,35	K562	blood:

Variant related genes	Relation type
ENSG00000217483	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1112877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882626	1.00[EUR][1000 genomes]
rs16882652	1.00[EUR][1000 genomes]
rs4088773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676608	1.00[EUR][1000 genomes]
rs55817542	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173098	1.00[EUR][1000 genomes]
rs58136138	1.00[EUR][1000 genomes]
rs59070352	1.00[EUR][1000 genomes]
rs59119615	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59508897	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60830036	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60941898	1.00[EUR][1000 genomes]
rs61530646	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6453590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907438	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917358	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929554	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931019	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751720	1.00[EUR][1000 genomes]
rs73751722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751730	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751731	1.00[EUR][1000 genomes]
rs73751732	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751734	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753349	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753350	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753351	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753353	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753354	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753355	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73753357	1.00[EUR][1000 genomes]
rs73753358	1.00[EUR][1000 genomes]
rs73753363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73754703	1.00[EUR][1000 genomes]
rs7754398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757187	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757848	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773525	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774395	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73289200-73290200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:73289200-73290200	Enhancers	HSMM	muscle
3	chr6:73289400-73290200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:73289600-73290000	Enhancers	NHLF	lung
5	chr6:73289600-73290200	Enhancers	Osteobl	bone
6	chr6:73289600-73290600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:73289800-73290200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:73289800-73290200	Flanking Active TSS	K562	blood
9	chr6:73289800-73290200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:73289800-73290800	Enhancers	Hela-S3	cervix

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