Variant report

Variant	rs7757187
Chromosome Location	chr6:73265292-73265293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73265060..73267575-chr6:73276770..73278945,2	K562	blood:
2	chr6:73185336..73188138-chr6:73263615..73266240,2	K562	blood:
3	chr6:73247420..73248963-chr6:73263884..73266355,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1112877	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882626	1.00[EUR][1000 genomes]
rs16882652	1.00[EUR][1000 genomes]
rs4088773	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676608	1.00[EUR][1000 genomes]
rs55817542	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55885580	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173098	1.00[EUR][1000 genomes]
rs58136138	1.00[EUR][1000 genomes]
rs59070352	1.00[EUR][1000 genomes]
rs59119615	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59508897	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60830036	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60941898	1.00[EUR][1000 genomes]
rs61530646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6453590	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907438	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6917358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929554	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6931019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751720	1.00[EUR][1000 genomes]
rs73751722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751728	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751730	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751731	1.00[EUR][1000 genomes]
rs73751732	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753349	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753350	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73753351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753353	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753354	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753355	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73753357	1.00[EUR][1000 genomes]
rs73753358	1.00[EUR][1000 genomes]
rs73753363	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73754703	1.00[EUR][1000 genomes]
rs7754398	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7774395	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73261000-73266000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:73261200-73265800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr6:73262200-73266000	Enhancers	HSMM	muscle
4	chr6:73262200-73266200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73262400-73265800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:73262600-73265800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:73262600-73266000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:73262600-73266600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:73263400-73265400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:73263800-73265600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:73263800-73267800	Enhancers	K562	blood
12	chr6:73263800-73271000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:73264000-73265600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:73264000-73265600	Enhancers	HMEC	breast
15	chr6:73264000-73266800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:73264200-73265400	Enhancers	NHLF	lung
17	chr6:73264400-73265800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:73264600-73265600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:73264600-73265600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:73264600-73265600	Enhancers	Fetal Muscle Leg	muscle
21	chr6:73264600-73265600	Enhancers	A549	lung
22	chr6:73264600-73266400	Enhancers	NHEK	skin
23	chr6:73264800-73266600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:73265000-73265400	Enhancers	NH-A	brain
25	chr6:73265000-73265600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:73265000-73266200	Enhancers	Osteobl	bone
27	chr6:73265000-73266600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:73265000-73266600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:73265000-73270400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:73265000-73270600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:73265200-73265600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:73265200-73268400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:73265200-73269000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:73265200-73270400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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