Variant report

Variant	rs73812110
Chromosome Location	chr4:26300576-26300577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26295031..26297895-chr4:26300560..26302361,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56213973	0.89[AFR][1000 genomes]
rs59840347	0.89[AFR][1000 genomes]
rs73809409	0.89[AFR][1000 genomes]
rs73809412	0.89[AFR][1000 genomes]
rs73809414	0.89[AFR][1000 genomes]
rs73809416	0.89[AFR][1000 genomes]
rs73809419	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26295400-26300600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:26297400-26304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:26297600-26302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:26298800-26302800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:26299000-26300600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:26299000-26301400	Enhancers	Fetal Lung	lung
7	chr4:26299200-26301600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:26299400-26300600	Enhancers	Osteobl	bone
9	chr4:26299600-26300600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr4:26299600-26300600	Enhancers	NH-A	brain
11	chr4:26299600-26300800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:26299600-26300800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:26299600-26301400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:26299800-26300600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr4:26299800-26300600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr4:26299800-26300800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr4:26299800-26300800	Flanking Active TSS	NHDF-Ad	bronchial
18	chr4:26300000-26300600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:26300000-26300600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr4:26300000-26300600	Enhancers	Fetal Muscle Leg	muscle
21	chr4:26300000-26300600	Enhancers	Hela-S3	cervix
22	chr4:26300000-26301000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:26300200-26300600	Enhancers	HSMMtube	muscle
24	chr4:26300200-26300800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:26300200-26300800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:26300200-26300800	Enhancers	Rectal Smooth Muscle	rectum
27	chr4:26300200-26301600	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:26300400-26300800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:26300400-26300800	Active TSS	Ovary	ovary
30	chr4:26300400-26300800	Enhancers	NHLF	lung
31	chr4:26300400-26301000	Enhancers	GM12878-XiMat	blood
32	chr4:26300400-26301400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:26300400-26301400	Weak transcription	Small Intestine	intestine
34	chr4:26300400-26302200	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:26300400-26303000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr4:26300400-26304000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links