Variant report

Variant	rs73809412
Chromosome Location	chr4:26324962-26324963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26319239..26325766-chr4:26360124..26364446,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56213973	1.00[AFR][1000 genomes]
rs58403823	0.87[AFR][1000 genomes]
rs59647814	0.89[AFR][1000 genomes]
rs59840347	1.00[AFR][1000 genomes]
rs60841839	0.89[AFR][1000 genomes]
rs73809409	1.00[AFR][1000 genomes]
rs73809414	1.00[AFR][1000 genomes]
rs73809416	1.00[AFR][1000 genomes]
rs73809419	1.00[AFR][1000 genomes]
rs73809420	0.89[AFR][1000 genomes]
rs73809422	0.89[AFR][1000 genomes]
rs73810220	0.89[AFR][1000 genomes]
rs73810223	0.89[AFR][1000 genomes]
rs73810226	0.89[AFR][1000 genomes]
rs73810229	0.89[AFR][1000 genomes]
rs73810231	0.89[AFR][1000 genomes]
rs73810904	0.89[AFR][1000 genomes]
rs73810906	0.89[AFR][1000 genomes]
rs73810907	0.89[AFR][1000 genomes]
rs73810910	0.89[AFR][1000 genomes]
rs73812110	0.89[AFR][1000 genomes]
rs7658107	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26320200-26325200	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:26320200-26326200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:26320400-26325400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr4:26320400-26325400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:26320400-26326000	Active TSS	Fetal Brain Female	brain
6	chr4:26320600-26325000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr4:26322200-26325000	Active TSS	Fetal Muscle Leg	muscle
8	chr4:26322200-26325800	Active TSS	GM12878-XiMat	blood
9	chr4:26322200-26325800	Active TSS	NHLF	lung
10	chr4:26322200-26326200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:26322600-26326000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:26323400-26325000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:26323800-26325000	Flanking Active TSS	NHEK	skin
14	chr4:26323800-26325200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:26323800-26326200	Weak transcription	Esophagus	oesophagus
16	chr4:26323800-26330200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:26323800-26332600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:26323800-26333000	Weak transcription	Small Intestine	intestine
19	chr4:26323800-26374400	Weak transcription	Lung	lung
20	chr4:26324000-26325000	Enhancers	Primary B cells from cord blood	blood
21	chr4:26324000-26325200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr4:26324000-26325600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:26324000-26325600	Enhancers	Rectal Smooth Muscle	rectum
24	chr4:26324000-26325800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr4:26324000-26325800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:26324000-26325800	Enhancers	Brain Cingulate Gyrus	brain
27	chr4:26324000-26325800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr4:26324000-26326000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr4:26324000-26326000	Enhancers	Liver	Liver
30	chr4:26324000-26326000	Enhancers	Brain Substantia Nigra	brain
31	chr4:26324000-26326000	Enhancers	Colon Smooth Muscle	Colon
32	chr4:26324000-26326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:26324000-26326800	Weak transcription	Stomach Mucosa	stomach
34	chr4:26324000-26327200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:26324000-26327400	Enhancers	Brain Hippocampus Middle	brain
36	chr4:26324000-26327600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr4:26324000-26328400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:26324000-26328600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr4:26324000-26332600	Weak transcription	Left Ventricle	heart
40	chr4:26324000-26332600	Weak transcription	Psoas Muscle	Psoas
41	chr4:26324000-26332800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:26324000-26332800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:26324000-26332800	Weak transcription	Pancreas	Pancrea
44	chr4:26324000-26332800	Weak transcription	Spleen	Spleen
45	chr4:26324200-26325000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr4:26324200-26325000	Enhancers	Fetal Intestine Large	intestine
47	chr4:26324200-26325000	Weak transcription	Fetal Kidney	kidney
48	chr4:26324200-26325000	Enhancers	K562	blood
49	chr4:26324200-26325200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr4:26324200-26325200	Flanking Active TSS	NH-A	brain

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