Variant report

Variant	rs59840347
Chromosome Location	chr4:26334636-26334637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26323720..26325318-chr4:26331825..26334750,2	K562	blood:
2	chr4:26334111..26335661-chr4:26342183..26344127,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56213973	1.00[AFR][1000 genomes]
rs58403823	0.87[AFR][1000 genomes]
rs59647814	0.89[AFR][1000 genomes]
rs60841839	0.89[AFR][1000 genomes]
rs73809409	1.00[AFR][1000 genomes]
rs73809412	1.00[AFR][1000 genomes]
rs73809414	1.00[AFR][1000 genomes]
rs73809416	1.00[AFR][1000 genomes]
rs73809419	1.00[AFR][1000 genomes]
rs73809420	0.89[AFR][1000 genomes]
rs73809422	0.89[AFR][1000 genomes]
rs73810220	0.89[AFR][1000 genomes]
rs73810223	0.89[AFR][1000 genomes]
rs73810226	0.89[AFR][1000 genomes]
rs73810229	0.89[AFR][1000 genomes]
rs73810231	0.89[AFR][1000 genomes]
rs73810904	0.89[AFR][1000 genomes]
rs73810906	0.89[AFR][1000 genomes]
rs73810907	0.89[AFR][1000 genomes]
rs73810910	0.89[AFR][1000 genomes]
rs73812110	0.89[AFR][1000 genomes]
rs7658107	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26338000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:26325600-26343600	Weak transcription	Primary T cells from cord blood	blood
5	chr4:26325800-26343000	Weak transcription	Fetal Stomach	stomach
6	chr4:26326000-26341600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:26326000-26344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:26326600-26339600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:26328800-26343600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:26329000-26335200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:26329000-26341800	Weak transcription	GM12878-XiMat	blood
12	chr4:26329000-26343200	Weak transcription	HMEC	breast
13	chr4:26329000-26343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:26329400-26342800	Weak transcription	NHEK	skin
15	chr4:26330600-26342600	Weak transcription	NHLF	lung
16	chr4:26332400-26338000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:26332400-26343600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:26332600-26342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:26332600-26343800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr4:26332800-26335800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:26333000-26334800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr4:26333000-26335800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:26333000-26336000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:26333000-26341000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:26333000-26341400	Weak transcription	Placenta	Placenta
26	chr4:26333000-26341800	Weak transcription	HSMM	muscle
27	chr4:26333000-26343200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:26333000-26343600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:26333000-26343600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:26333000-26343600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:26333000-26343600	Weak transcription	Fetal Brain Female	brain
32	chr4:26333200-26335400	Weak transcription	Primary B cells from cord blood	blood
33	chr4:26333200-26335800	Weak transcription	NH-A	brain
34	chr4:26333400-26334800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
35	chr4:26333400-26335000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:26333400-26335600	Weak transcription	Psoas Muscle	Psoas
37	chr4:26333400-26335800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:26333400-26336000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr4:26333400-26336000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:26333400-26336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:26333400-26338600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:26333400-26338600	Weak transcription	Thymus	Thymus
43	chr4:26333400-26338800	Weak transcription	Fetal Thymus	thymus
44	chr4:26333400-26340600	Weak transcription	Ovary	ovary
45	chr4:26333400-26341800	Weak transcription	Spleen	Spleen
46	chr4:26333400-26342800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:26333400-26342800	Weak transcription	Right Atrium	heart
48	chr4:26333400-26343000	Weak transcription	Pancreas	Pancrea
49	chr4:26333400-26343400	Weak transcription	Aorta	Aorta
50	chr4:26333400-26343600	Weak transcription	Fetal Muscle Leg	muscle

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