Variant report

Variant	rs73809419
Chromosome Location	chr4:26343715-26343716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:26343695-26343718	GM12878	blood:	n/a	n/a
2	TCF12	chr4:26343575-26344623	SK-N-SH	brain:	n/a	chr4:26343874-26343881
3	KAP1	chr4:26343262-26344824	HEK293	kidney:	n/a	chr4:26344509-26344518
4	POLR2A	chr4:26343568-26343758	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26334111..26335661-chr4:26342183..26344127,2	MCF-7	breast:

Variant related genes	Relation type
RBPJ	TF binding region

rs_ID	r²[population]
rs56213973	1.00[AFR][1000 genomes]
rs58403823	0.87[AFR][1000 genomes]
rs59647814	0.89[AFR][1000 genomes]
rs59840347	1.00[AFR][1000 genomes]
rs60841839	0.89[AFR][1000 genomes]
rs73809409	1.00[AFR][1000 genomes]
rs73809412	1.00[AFR][1000 genomes]
rs73809414	1.00[AFR][1000 genomes]
rs73809416	1.00[AFR][1000 genomes]
rs73809420	0.89[AFR][1000 genomes]
rs73809422	0.89[AFR][1000 genomes]
rs73810220	0.89[AFR][1000 genomes]
rs73810223	0.89[AFR][1000 genomes]
rs73810226	0.89[AFR][1000 genomes]
rs73810229	0.89[AFR][1000 genomes]
rs73810231	0.89[AFR][1000 genomes]
rs73810904	0.89[AFR][1000 genomes]
rs73810906	0.89[AFR][1000 genomes]
rs73810907	0.89[AFR][1000 genomes]
rs73810910	0.89[AFR][1000 genomes]
rs73812110	0.89[AFR][1000 genomes]
rs7658107	0.89[AFR][1000 genomes]

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26326000-26344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:26332600-26343800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:26333400-26343800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:26333600-26347200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:26334000-26344600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:26339400-26345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:26340400-26344400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:26341000-26343800	Enhancers	Brain Cingulate Gyrus	brain
12	chr4:26341400-26344800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:26341400-26345200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:26341600-26344400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr4:26341600-26345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:26341800-26343800	Enhancers	NHDF-Ad	bronchial
17	chr4:26341800-26344000	Enhancers	Brain Substantia Nigra	brain
18	chr4:26341800-26344400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:26341800-26344400	Enhancers	GM12878-XiMat	blood
20	chr4:26341800-26345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr4:26341800-26345400	Enhancers	HSMMtube	muscle
22	chr4:26342000-26344000	Weak transcription	Fetal Kidney	kidney
23	chr4:26342000-26345200	Enhancers	Colon Smooth Muscle	Colon
24	chr4:26342000-26350400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:26342400-26344400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:26342400-26345800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr4:26342400-26347600	Enhancers	HSMM	muscle
28	chr4:26342600-26344000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr4:26342600-26344200	Enhancers	Ovary	ovary
30	chr4:26342600-26344400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr4:26342600-26344400	Enhancers	NHLF	lung
32	chr4:26342600-26344800	Enhancers	K562	blood
33	chr4:26342600-26345000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr4:26342600-26345800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:26342800-26343800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:26342800-26343800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:26342800-26343800	Enhancers	Small Intestine	intestine
38	chr4:26342800-26344000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:26342800-26344200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr4:26342800-26344200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:26342800-26344200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr4:26342800-26344400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:26342800-26344800	Enhancers	Right Ventricle	heart
44	chr4:26342800-26345400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:26342800-26345800	Enhancers	Psoas Muscle	Psoas
46	chr4:26343000-26343800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr4:26343000-26343800	Enhancers	Left Ventricle	heart
48	chr4:26343000-26344000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr4:26343000-26344000	Weak transcription	A549	lung
50	chr4:26343000-26344200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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