Variant report

Variant	rs73809409
Chromosome Location	chr4:26323799-26323800
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:26320536-26324309	IMR90	lung:	n/a	n/a
2	ZBTB7A	chr4:26323547-26323848	K562	blood:	n/a	n/a
3	SIN3A	chr4:26320603-26324322	H1-hESC	embryonic stem cell:	n/a	chr4:26322924-26322935 chr4:26320763-26320772
4	POLR2A	chr4:26320721-26323956	H1-neurons	neurons:	n/a	n/a
5	SIN3AK20	chr4:26323551-26323911	H1-hESC	embryonic stem cell:	n/a	n/a
6	SIN3AK20	chr4:26323645-26323950	PFSK-1	brain:	n/a	n/a
7	JUN	chr4:26320429-26324200	K562	blood:	n/a	chr4:26320731-26320738 chr4:26323579-26323588 chr4:26321412-26321426 chr4:26320719-26320727 chr4:26320731-26320739
8	POLR2A	chr4:26322937-26324695	U87	brain:	n/a	n/a
9	REST	chr4:26320592-26324055	H1-neurons	neurons:	n/a	chr4:26323177-26323190
10	POLR2A	chr4:26320610-26323804	GM19193	blood:	n/a	n/a
11	MAX	chr4:26323719-26323896	Hela-S3	cervix:	n/a	n/a
12	CTCF	chr4:26323660-26323810	GM06990	blood:	n/a	n/a
13	RAD21	chr4:26323487-26323831	H1-hESC	embryonic stem cell:	n/a	n/a
14	MAZ	chr4:26323657-26323878	GM12878	blood:	n/a	n/a
15	UBTF	chr4:26320596-26323832	K562	blood:	n/a	n/a
16	CTBP2	chr4:26322940-26323902	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr4:26320576-26323982	HL-60	blood:	n/a	n/a
18	RAD21	chr4:26323197-26324238	IMR90	lung:	n/a	n/a
19	MXI1	chr4:26320607-26324274	IMR90	lung:	n/a	n/a
20	RCOR1	chr4:26322972-26323947	K562	blood:	n/a	n/a
21	POLR2A	chr4:26320441-26324027	H1-hESC	embryonic stem cell:	n/a	n/a
22	MXI1	chr4:26320567-26324109	SK-N-SH	brain:	n/a	n/a
23	MAZ	chr4:26320620-26323836	K562	blood:	n/a	chr4:26321515-26321525 chr4:26321518-26321528 chr4:26320772-26320782 chr4:26323378-26323388
24	TAF1	chr4:26321154-26323885	H1-neurons	neurons:	n/a	n/a
25	CHD1	chr4:26323364-26324122	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr4:26320699-26323953	H1-neurons	neurons:	n/a	n/a
27	POLR2A	chr4:26320479-26323907	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26319239..26325766-chr4:26360124..26364446,7	MCF-7	breast:

Variant related genes	Relation type
RBPJ	TF binding region
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56213973	1.00[AFR][1000 genomes]
rs58403823	0.87[AFR][1000 genomes]
rs59647814	0.89[AFR][1000 genomes]
rs59840347	1.00[AFR][1000 genomes]
rs60841839	0.89[AFR][1000 genomes]
rs73809412	1.00[AFR][1000 genomes]
rs73809414	1.00[AFR][1000 genomes]
rs73809416	1.00[AFR][1000 genomes]
rs73809419	1.00[AFR][1000 genomes]
rs73809420	0.89[AFR][1000 genomes]
rs73809422	0.89[AFR][1000 genomes]
rs73810220	0.89[AFR][1000 genomes]
rs73810223	0.89[AFR][1000 genomes]
rs73810226	0.89[AFR][1000 genomes]
rs73810229	0.89[AFR][1000 genomes]
rs73810231	0.89[AFR][1000 genomes]
rs73810904	0.89[AFR][1000 genomes]
rs73810906	0.89[AFR][1000 genomes]
rs73810907	0.89[AFR][1000 genomes]
rs73810910	0.89[AFR][1000 genomes]
rs73812110	0.89[AFR][1000 genomes]
rs7658107	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26319800-26324800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr4:26320000-26324200	Active TSS	Hela-S3	cervix
3	chr4:26320200-26323800	Active TSS	K562	blood
4	chr4:26320200-26324000	Active TSS	A549	lung
5	chr4:26320200-26324400	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr4:26320200-26324800	Active TSS	HSMMtube	muscle
7	chr4:26320200-26325200	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr4:26320200-26326200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:26320400-26324200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:26320400-26324200	Active TSS	Fetal Intestine Large	intestine
11	chr4:26320400-26324400	Active TSS	HSMM	muscle
12	chr4:26320400-26324600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:26320400-26324600	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr4:26320400-26324600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr4:26320400-26324600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:26320400-26324800	Active TSS	H1 Cell Line	embryonic stem cell
17	chr4:26320400-26324800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:26320400-26325400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr4:26320400-26325400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:26320400-26326000	Active TSS	Fetal Brain Female	brain
21	chr4:26320600-26323800	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr4:26320600-26323800	Active TSS	Brain Substantia Nigra	brain
23	chr4:26320600-26323800	Active TSS	Colon Smooth Muscle	Colon
24	chr4:26320600-26323800	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr4:26320600-26323800	Active TSS	Fetal Intestine Small	intestine
26	chr4:26320600-26323800	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr4:26320600-26323800	Active TSS	Small Intestine	intestine
28	chr4:26320600-26323800	Active TSS	NHEK	skin
29	chr4:26320600-26324000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:26320600-26324000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:26320600-26324000	Active TSS	Aorta	Aorta
32	chr4:26320600-26324000	Active TSS	Fetal Lung	lung
33	chr4:26320600-26324000	Active TSS	Fetal Stomach	stomach
34	chr4:26320600-26324000	Active TSS	Left Ventricle	heart
35	chr4:26320600-26324000	Active TSS	Pancreas	Pancrea
36	chr4:26320600-26324000	Active TSS	Psoas Muscle	Psoas
37	chr4:26320600-26324000	Active TSS	Stomach Mucosa	stomach
38	chr4:26320600-26324200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr4:26320600-26324200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr4:26320600-26324200	Active TSS	Brain Angular Gyrus	brain
41	chr4:26320600-26324200	Active TSS	Fetal Kidney	kidney
42	chr4:26320600-26324200	Active TSS	Ovary	ovary
43	chr4:26320600-26324400	Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr4:26320600-26324400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr4:26320600-26324400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:26320600-26324400	Active TSS	Brain Anterior Caudate	brain
47	chr4:26320600-26324600	Active TSS	H9 Cell Line	embryonic stem cell
48	chr4:26320600-26324600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:26320600-26324600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:26320600-26324600	Active TSS	iPS-15b Cell Line	embryonic stem cell

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