Variant report

Variant	rs73837572
Chromosome Location	chr4:87894909-87894910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:87892815..87895496-chr4:87897060..87900132,4	MCF-7	breast:
2	chr4:87847594..87849419-chr4:87893253..87895027,2	MCF-7	breast:
3	chr4:87894083..87901163-chr4:87926378..87930735,13	K562	blood:
4	chr4:87885535..87895894-chr4:87923652..87929924,15	K562	blood:
5	chr4:87856296..87858814-chr4:87892568..87895744,3	MCF-7	breast:
6	chr4:87892847..87896142-chr4:87913687..87916404,3	K562	blood:
7	chr4:87894580..87900721-chr4:87926553..87929375,8	MCF-7	breast:
8	chr4:87876640..87879559-chr4:87894378..87897359,2	K562	blood:
9	chr4:87891928..87895544-chr4:87897508..87902479,6	K562	blood:
10	chr4:87854105..87855852-chr4:87892879..87895609,2	K562	blood:
11	chr4:87858518..87860018-chr4:87894461..87896898,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172493	Chromatin interaction
ENSG00000163633	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13435377	1.00[AMR][1000 genomes]
rs28585548	1.00[AMR][1000 genomes]
rs28702596	1.00[AMR][1000 genomes]
rs55644945	1.00[AMR][1000 genomes]
rs58252316	1.00[AMR][1000 genomes]
rs60111562	1.00[AMR][1000 genomes]
rs60354679	1.00[AMR][1000 genomes]
rs6853105	1.00[AMR][1000 genomes]
rs73837055	1.00[AMR][1000 genomes]
rs73837061	1.00[AMR][1000 genomes]
rs73837062	1.00[AMR][1000 genomes]
rs73837570	1.00[AMR][1000 genomes]
rs73837573	1.00[AMR][1000 genomes]
rs73838344	1.00[AMR][1000 genomes]
rs73838352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87868600-87898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:87872600-87926200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:87881000-87897600	Weak transcription	Brain Angular Gyrus	brain
4	chr4:87882000-87895400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:87882200-87895600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:87882400-87898600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:87882600-87920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:87882800-87912400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:87886600-87898600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:87888200-87895800	Weak transcription	Primary T cells from cord blood	blood
11	chr4:87888400-87895000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:87888800-87898800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:87889200-87895400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:87890200-87898600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:87891000-87895200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:87891200-87896200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:87891400-87896000	Enhancers	Stomach Mucosa	stomach
18	chr4:87891600-87897600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr4:87891800-87895200	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr4:87891800-87895400	Enhancers	K562	blood
21	chr4:87891800-87895600	Enhancers	Fetal Thymus	thymus
22	chr4:87892000-87900400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr4:87892200-87907000	Weak transcription	Brain Anterior Caudate	brain
24	chr4:87892400-87920600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:87892600-87896600	Enhancers	Dnd41	blood
26	chr4:87892600-87898400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:87892800-87898600	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:87892800-87909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr4:87893200-87896400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr4:87893200-87900200	Weak transcription	Esophagus	oesophagus
31	chr4:87893400-87895600	Enhancers	Duodenum Mucosa	Duodenum
32	chr4:87893400-87895800	Enhancers	Fetal Intestine Large	intestine
33	chr4:87893800-87895000	Enhancers	HUVEC	blood vessel
34	chr4:87893800-87895200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr4:87893800-87895200	Enhancers	Fetal Heart	heart
36	chr4:87893800-87895400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr4:87893800-87895600	Flanking Active TSS	HepG2	liver
38	chr4:87893800-87896200	Enhancers	Primary hematopoietic stem cells	blood
39	chr4:87893800-87896600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr4:87894000-87895200	Enhancers	Adipose Nuclei	Adipose
41	chr4:87894000-87895200	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr4:87894000-87895200	Enhancers	A549	lung
43	chr4:87894000-87895400	Enhancers	H1 Cell Line	embryonic stem cell
44	chr4:87894000-87895400	Enhancers	Fetal Intestine Small	intestine
45	chr4:87894000-87895400	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr4:87894000-87895600	Enhancers	NHEK	skin
47	chr4:87894000-87895800	Enhancers	Thymus	Thymus
48	chr4:87894000-87896000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:87894000-87896400	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr4:87894200-87895000	Enhancers	Colon Smooth Muscle	Colon

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