Variant report

Variant	rs13435377
Chromosome Location	chr4:87825838-87825839
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28585548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55644945	1.00[AMR][1000 genomes]
rs58252316	1.00[AMR][1000 genomes]
rs60111562	1.00[AMR][1000 genomes]
rs60354679	1.00[AMR][1000 genomes]
rs6853105	1.00[AMR][1000 genomes]
rs73837055	1.00[AMR][1000 genomes]
rs73837061	1.00[AMR][1000 genomes]
rs73837062	1.00[AMR][1000 genomes]
rs73837570	1.00[AMR][1000 genomes]
rs73837572	1.00[AMR][1000 genomes]
rs73837573	1.00[AMR][1000 genomes]
rs73838344	1.00[AMR][1000 genomes]
rs73838352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87814200-87829400	Weak transcription	K562	blood
2	chr4:87814600-87830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:87822400-87829800	Weak transcription	Placenta	Placenta
4	chr4:87825000-87826000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr4:87825000-87826000	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr4:87825000-87826000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr4:87825200-87826000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:87825200-87826000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr4:87825400-87826000	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr4:87825600-87826000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:87825600-87826000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:87825600-87826200	Active TSS	HMEC	breast
13	chr4:87825600-87829000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:87825600-87829200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:87825600-87829200	Weak transcription	Aorta	Aorta
16	chr4:87825600-87829400	Weak transcription	Osteobl	bone
17	chr4:87825600-87830000	Weak transcription	Psoas Muscle	Psoas
18	chr4:87825600-87838800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:87825600-87846000	Weak transcription	Gastric	stomach
20	chr4:87825600-87849400	Weak transcription	Lung	lung
21	chr4:87825600-87849400	Weak transcription	Spleen	Spleen
22	chr4:87825800-87826000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr4:87825800-87826000	Enhancers	Primary B cells from cord blood	blood
24	chr4:87825800-87826000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
25	chr4:87825800-87826000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:87825800-87826000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:87825800-87826000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:87825800-87826000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:87825800-87826000	Enhancers	Duodenum Mucosa	Duodenum
30	chr4:87825800-87826000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr4:87825800-87826000	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr4:87825800-87826000	Weak transcription	Fetal Kidney	kidney
33	chr4:87825800-87826000	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr4:87825800-87826000	Active TSS	Stomach Smooth Muscle	stomach
35	chr4:87825800-87826200	Enhancers	Liver	Liver
36	chr4:87825800-87826200	Enhancers	Brain Substantia Nigra	brain
37	chr4:87825800-87826200	Enhancers	Ovary	ovary
38	chr4:87825800-87828400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr4:87825800-87828400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:87825800-87828400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:87825800-87828600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:87825800-87828600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr4:87825800-87828600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:87825800-87828800	Weak transcription	Brain Hippocampus Middle	brain
45	chr4:87825800-87828800	Weak transcription	Fetal Thymus	thymus
46	chr4:87825800-87828800	Weak transcription	Right Atrium	heart
47	chr4:87825800-87829000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:87825800-87829000	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr4:87825800-87829200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:87825800-87829200	Weak transcription	Colon Smooth Muscle	Colon

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