Variant report

Variant	rs28585548
Chromosome Location	chr4:87781529-87781530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13435377	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55644945	1.00[AMR][1000 genomes]
rs58252316	1.00[AMR][1000 genomes]
rs60111562	1.00[AMR][1000 genomes]
rs60354679	1.00[AMR][1000 genomes]
rs6853105	1.00[AMR][1000 genomes]
rs73837055	1.00[AMR][1000 genomes]
rs73837061	1.00[AMR][1000 genomes]
rs73837062	1.00[AMR][1000 genomes]
rs73837570	1.00[AMR][1000 genomes]
rs73837572	1.00[AMR][1000 genomes]
rs73837573	1.00[AMR][1000 genomes]
rs73838344	1.00[AMR][1000 genomes]
rs73838352	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv508297	chr4:87778783-87868508	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv967771	chr4:87781398-87798513	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87771600-87785600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr4:87779200-87798400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:87779600-87786600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:87780600-87782200	Enhancers	Fetal Intestine Large	intestine
5	chr4:87780800-87781600	Enhancers	Stomach Mucosa	stomach
6	chr4:87781400-87782000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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