Variant report

Variant	rs73865731
Chromosome Location	chr3:146182093-146182094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16858389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57403235	1.00[AMR][1000 genomes]
rs59940298	0.81[AFR][1000 genomes]
rs6440442	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865707	0.87[AFR][1000 genomes]
rs73865711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865744	1.00[AMR][1000 genomes]
rs73865754	1.00[AMR][1000 genomes]
rs73865756	1.00[AMR][1000 genomes]
rs73865761	1.00[AMR][1000 genomes]
rs7614937	1.00[AMR][1000 genomes]
rs7615016	1.00[AMR][1000 genomes]
rs7649720	1.00[AMR][1000 genomes]
rs7649766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146181000-146184000	Weak transcription	Pancreas	Pancrea
2	chr3:146181600-146183000	Enhancers	HMEC	breast
3	chr3:146181600-146183000	Enhancers	NHEK	skin
4	chr3:146181600-146185000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:146181600-146185200	Enhancers	NHDF-Ad	bronchial
6	chr3:146181600-146185800	Weak transcription	K562	blood
7	chr3:146181600-146187000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:146181800-146182600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:146181800-146183000	Enhancers	Osteobl	bone
10	chr3:146181800-146183600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:146181800-146185000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:146182000-146182400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:146182000-146183000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:146182000-146183800	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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