Variant report

Variant	rs73865732
Chromosome Location	chr3:146186494-146186495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146185173..146186845-chr3:146259254..146261120,2	K562	blood:
2	chr3:146185354..146186858-chr3:146261288..146263091,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188313	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16858389	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57403235	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440443	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865707	0.85[AFR][1000 genomes]
rs73865711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865744	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865754	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865761	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614937	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7615016	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649766	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146181600-146187000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:146183000-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:146183000-146187000	Weak transcription	HMEC	breast
4	chr3:146183000-146187000	Weak transcription	NHEK	skin
5	chr3:146183600-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:146184000-146187000	Weak transcription	Right Atrium	heart
7	chr3:146184200-146186800	Weak transcription	Esophagus	oesophagus
8	chr3:146184200-146186800	Weak transcription	Pancreas	Pancrea
9	chr3:146184200-146187000	Weak transcription	Aorta	Aorta
10	chr3:146184200-146187000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:146185200-146186600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:146185600-146187000	Enhancers	NHDF-Ad	bronchial
13	chr3:146185800-146187000	Enhancers	Fetal Heart	heart
14	chr3:146185800-146187000	Weak transcription	Gastric	stomach
15	chr3:146185800-146187000	Enhancers	Stomach Mucosa	stomach
16	chr3:146185800-146187200	Enhancers	Fetal Lung	lung
17	chr3:146185800-146187200	Weak transcription	Psoas Muscle	Psoas
18	chr3:146185800-146187200	Enhancers	NHLF	lung
19	chr3:146186000-146186600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:146186000-146186600	Enhancers	Hela-S3	cervix
21	chr3:146186000-146187000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:146186000-146187000	Enhancers	Primary hematopoietic stem cells	blood
23	chr3:146186000-146187000	Enhancers	Brain Substantia Nigra	brain
24	chr3:146186200-146186600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:146186200-146186600	Enhancers	Fetal Stomach	stomach
26	chr3:146186200-146186800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:146186200-146186800	Enhancers	Brain Hippocampus Middle	brain
28	chr3:146186200-146186800	Enhancers	Fetal Kidney	kidney
29	chr3:146186200-146186800	Active TSS	K562	blood
30	chr3:146186200-146187000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:146186400-146186600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:146186400-146186800	Enhancers	Primary B cells from cord blood	blood
33	chr3:146186400-146186800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:146186400-146186800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:146186400-146186800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:146186400-146186800	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr3:146186400-146187000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:146186400-146187200	Flanking Active TSS	A549	lung
39	chr3:146186400-146187600	Flanking Active TSS	Osteobl	bone
40	chr3:146186400-146188800	Active TSS	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links