Variant report

Variant	rs73865761
Chromosome Location	chr3:146224324-146224325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:146220962..146225419-chr3:146230623..146236617,7	MCF-7	breast:
2	chr3:146223441..146225432-chr3:146233856..146237990,4	K562	blood:
3	chr3:146213959..146215487-chr3:146223971..146226967,2	K562	blood:
4	chr3:146216037..146218626-chr3:146223449..146226621,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLSCR2-2	chr3:146222357-146224347	NONHSAT092559

Variant related genes	Relation type
ENSG00000188313	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16858389	1.00[AMR][1000 genomes]
rs57270112	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57403235	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440442	1.00[AMR][1000 genomes]
rs6440443	1.00[AMR][1000 genomes]
rs73865711	1.00[AMR][1000 genomes]
rs73865721	1.00[AMR][1000 genomes]
rs73865731	1.00[AMR][1000 genomes]
rs73865732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865756	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7615016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448053	chr3:146186791-146262066	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3523751	chr3:146186838-146261806	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3523753	chr3:146186838-146261806	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2496437	chr3:146186902-146262961	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146214200-146235400	Weak transcription	Right Atrium	heart
2	chr3:146216000-146232800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:146216200-146230000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:146216600-146230200	Weak transcription	Primary T cells from cord blood	blood
5	chr3:146218400-146232200	Weak transcription	Aorta	Aorta
6	chr3:146220200-146230400	Weak transcription	Spleen	Spleen
7	chr3:146220400-146225600	Enhancers	NHDF-Ad	bronchial
8	chr3:146220600-146225400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:146220600-146225600	Enhancers	Osteobl	bone
10	chr3:146220600-146226200	Enhancers	Hela-S3	cervix
11	chr3:146220800-146225200	Weak transcription	Pancreas	Pancrea
12	chr3:146220800-146225600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:146220800-146225600	Enhancers	HSMM	muscle
14	chr3:146220800-146225800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:146220800-146225800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:146220800-146226000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:146220800-146226200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:146221000-146225000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:146221000-146225400	Enhancers	NHLF	lung
20	chr3:146221000-146226000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:146221000-146226400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:146221200-146225600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:146221200-146226000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:146221200-146226200	Enhancers	HUVEC	blood vessel
25	chr3:146221400-146225800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr3:146221400-146226000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:146221600-146225000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr3:146221600-146225200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:146221600-146225200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr3:146221600-146225600	Enhancers	HMEC	breast
31	chr3:146221800-146225400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:146221800-146225400	Enhancers	NH-A	brain
33	chr3:146221800-146226200	Enhancers	NHEK	skin
34	chr3:146222000-146225600	Enhancers	Fetal Intestine Small	intestine
35	chr3:146222000-146226400	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr3:146222200-146225200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:146222200-146225200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:146222200-146225400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr3:146222200-146231600	Weak transcription	Esophagus	oesophagus
40	chr3:146222400-146225000	Enhancers	Fetal Lung	lung
41	chr3:146222400-146226000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:146222600-146224800	Enhancers	Liver	Liver
43	chr3:146222600-146225600	Enhancers	Adipose Nuclei	Adipose
44	chr3:146222800-146224400	Weak transcription	Small Intestine	intestine
45	chr3:146222800-146225200	Weak transcription	Placenta	Placenta
46	chr3:146222800-146231200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:146222800-146237200	Weak transcription	GM12878-XiMat	blood
48	chr3:146223000-146224400	Weak transcription	K562	blood
49	chr3:146223000-146224600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:146223000-146225200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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