Variant report

Variant	rs7614937
Chromosome Location	chr3:146214051-146214052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16858389	1.00[AMR][1000 genomes]
rs57270112	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57403235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440442	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440443	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865711	1.00[AMR][1000 genomes]
rs73865721	1.00[AMR][1000 genomes]
rs73865731	1.00[AMR][1000 genomes]
rs73865732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7615016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3448053	chr3:146186791-146262066	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3523751	chr3:146186838-146261806	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv3523753	chr3:146186838-146261806	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2496437	chr3:146186902-146262961	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv3416587	chr3:146191303-146222138	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146211400-146221200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:146212800-146214800	Enhancers	K562	blood
3	chr3:146213000-146215600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:146213600-146215000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:146213600-146215000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:146213800-146214600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:146213800-146214600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:146213800-146214800	Enhancers	NHDF-Ad	bronchial
9	chr3:146214000-146214600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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